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Pura Ulun Danu temple, Bali

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Bali's charm is undeniable. The perfect tropical paradise, it is a land of enchanting mountains, pristine waters, and stunning wildlife. Visiting Bali aboard any of these 26 top small ship cruises for 2026 and 2027 offers the opportunity to experience a magical journey through some of the most beautiful islands of Indonesia. Discover the charm of BaliBenoaBanta IslandMoyo Island, and Menjangan, which will allow you to explore a variety of cultures and enjoy the country's most beautiful and hidden landscapes. You will also have the opportunity to visit ancient temples and villagessnorkel on coral reefs, and relax on white sandy beaches. Our 8 to 21 days cruises range from $6,320 to $54,076. Come aboard and discover Bali cruises to choose from.
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    • Bali
A pair of dragons on Komodo Island
from $11,030
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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Benoa / Labuan Bajo
Activity Level
Variable
Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.
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Cruising Adventures! Orangutan
from $9,450
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Orangutans & Dragons

Borneo - Komodo - 13 Day Itinerary aboard Katharina
  • See wild orangutans on Pulau Kaja
  • Explore Borneo blackwater lakes
  • Visit traditional Dayak villages
  • Trek Rinca Island for dragons
  • Build coral racks at Hatamin
Starts / Ends
Borneo / Melo Village
Activity Level
Variable
Embark on a 13-day Indonesia cruise aboard Katharina. Travel from the rivers of Kalimantan (Borneo) to the volcanic islands of Komodo National Park. Spot wild orangutans, swim alongside whale sharks, encounter fearsome Komodo dragons, and discover vibrant coral reefs on this factual, unforgettable Indonesian sailing adventure.
Cruise Details
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Cruising Adventures! Komodo Dragon
from $9,450
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Orangutans & Dragons

Borneo - Komodo - 13 Day Itinerary aboard Ombak Putih
  • See wild orangutans on Pulau Kaja
  • Visit traditional Dayak villages
  • Track Komodo dragons
  • Swim with majestic whale sharks
  • Build coral racks at Hatamin
Starts / Ends
Borneo / Melo Village
Activities
Small Ship Sailing, Hiking, Land & Sea Exploration
Activity Level
Variable
Discover the wonders of Indonesia on a 13-day cruise aboard the Ombak Putih. This trip takes you from the rainforests of Borneo to the volcanic islands of Komodo National Park. Encounter wild orangutans, swim with majestic whale sharks, and track prehistoric Komodo dragons in their natural habitats.
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Snorkel in clear blue water above a large whale shark
from $6,320
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Ombak Putih
  • Visit local communities
  • Snorkel along vibrant coral reefs
  • Enjoy a barbecue on the beach
  • Discover unique species
  • Spot legendary Komodo dragons
Starts / Ends
Komodo Island / Komodo Island
Activity Level
Variable
Take 9 days to snorkel, encounter wildlife, and explore tropical islands aboard the Ombak Putih. Embark from Komodo to spot legendary dragons on Rinca Island. Swim with majestic whale sharks and manta rays, participate in coral conservation, and witness authentic cultural performances in Indonesian villages.
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A snorkeler in full gear, exploring the jagged rock overhangs and hidden crevices of the reef
from $6,320
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Katharina
  • Trek for wild Komodo dragons
  • Swim with giant whale sharks
  • Visit a Moyo Island waterfall
  • Watch traditional buffalo racing
  • Build racks for coral reefs
Starts / Ends
Komodo Island / Komodo Island
Activity Level
Variable
Embark on a 9-day cruise aboard the Katharina, sailing from Komodo to Komodo in Indonesia. You explore volcanic islands, trek through national parks to spot wild Komodo dragons, and swim with whale sharks and manta rays. Visit local villages and experience a coral restoration project on Hatamin Island.
Cruise Details
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Experience snorkeling with a large school of silver fish
from $6,320
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Whale Sharks, Corals & Dragons Family Cruise with a Marine Biologist

Komodo Roundtrip - 9 Day Itinerary aboard Ombak Putih
  • Track wild Komodo dragons
  • Swim with giant whale sharks
  • Spot Komodo dragons
  • Uncover Moyo waterfall
  • Learn from a marine biologist
  • Snorkel vibrant coral reefs
  • Hear birds during forest hikes
  • Play on remote pink beaches
Starts / Ends
Komodo Island / Melo Village
Activities
Stand Up Paddle Boarding
Activity Level
Variable
Enjoy a 9-day family cruise aboard the Ombak Putih, sailing roundtrip through Indonesia from Komodo to Komodo. Led by a marine biologist, you encounter whale sharks, manta rays, and wild Komodo dragons. Discover vibrant reefs, active volcanoes, and local culture.
Cruise Details
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Experience the unique architecture of Asia.
from $10,530
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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Labuan Bajo / Benoa
Activities
Fishing
Activity Level
Variable
Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.
Cruise Details
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Dive among amazing corals in Indonesia
from $8,419
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The Sunda Passage

Bali to Singapore - 9 Day Itinerary aboard Atlas Adventurer
  • Explore Uluwatu Temple, Bali
  • Explore Java’s Mount Bromo
  • Discover Karimunjawa coral reefs
  • Explore Tioman Island’s coast
Starts / Ends
Benoa / Singapore
Activities
Village Visits, Rainforest Exploration
Activity Level
Variable
Explore a 9-day cruise from Benoa to Singapore aboard Atlas Adventurer. Visit Bali temples, Mount Bromo, Karimunjawa, Belitung, Tioman Island and Singapore while discovering Indonesian culture, volcanic landscapes, coral reefs, marine life, historic sites, sea turtle conservation and local traditions across Indonesia and Malaysia.
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Tanah Lot Hindu Temple - Bali
from $8,418
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Panoramas & Pagodas

Singapore to Bali - 10 Day Itinerary aboard Atlas Adventurer
  • Explore Singapore Gardens
  • Visit Borobudur Temples
  • Encounter Komodo Dragons
  • Discover Lombok Culture
Starts / Ends
Singapore / Benoa
Activity Level
Variable
Discover Singapore, Java, Komodo Island, Lombok, and Bali on this 10-day cruise from Singapore to Benoa aboard Atlas Adventurer. Visit historic cities, UNESCO World Heritage sites, volcanic landscapes, cultural landmarks, and island nature reserves. Enjoy scenic cruising across the Java Sea with opportunities to spot marine wildlife.
Cruise Details
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Beautiful wild coast of Raja Ampat, Indonesia
from $9,525
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Raja Ampat & Cenderawasih Bay Expedition: Indonesia's Coral Triangle

Sorong Roundtrip - 12 Day Itinerary aboard SH Minerva
  • Snorkel with whale sharks
  • Cruise Kabui Bay by Zodiac
  • Swim Lenmakana Lake with jellyfish
  • Snorkel around Pulau Kri
Starts / Ends
Benoa / Denpasar
Activities
Scuba Diving
Activity Level
Variable
Explore Indonesia on an 12-day cruise aboard the SH Minerva through Papua and Raja Ampat. Visit remote islands, snorkel coral reefs, swim with whale sharks, kayak through limestone lagoons, and experience Papuan culture. Discover crystal-clear waters, diverse marine life, and island landscapes across one of the world's richest marine regions.
Cruise Details
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Colorful sunset over Sulawesi
from $12,142
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Island Treasures

Benoa (Bali) - Manila - 14 Day Itinerary aboard Atlas Adventurer
  • Explore Bali Temples
  • Discover Borneo Wildlife
  • Visit Palawan Lagoons
  • Explore Manila Heritage
Starts / Ends
Benoa / Metro Manila
Activities
Kayaking, Snorkeling, Wildlife Viewing, Whale Watching, Archaeological Site Visits, Local Market Visits, Spa Relaxation
Activity Level
Variable
Discover Indonesia, Malaysia, and the Philippines on this 14-day cruise from Bali, Indonesia to Manila, Philippines aboard Atlas Adventurer. Visit Moyo Island, Makassar, the Derawan Islands, Borneo, Palawan, El Nido, Boracay, and Corregidor Island while enjoying scenic cruising and opportunities to explore wildlife, reefs, and UNESCO sites.
Cruise Details
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Aerial view of Raja Ampat
from $12,195
EBD
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Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer
  • Explore Cenderawasih Bay
  • Immerse in West Papuan culture
  • Experience Pulau Num lagoons
  • Admire Raja Ampat reefs
  • Discover Wayag’s limestone cliffs
  • Birdwatch in Waigeo
Starts / Ends
Denpasar / Sorong
Activities
Festival Visits
Activity Level
Variable
Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.
Cruise Details
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Tanah Lot Hindu Temple - Bali
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