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Top San Juan Islands Trips & Tours in September 2025

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Discover San Juan Islands in September 2025 on one of these 9 tours hand-selected by the travel experts at Adventure Life. Explore the best of during September 2025 as you enjoy Whale Watching, Hiking, Village Visits, Wildlife Viewing, and Kayaking. Prices for trips in September 2025 range from $5,700 to $17,365 for a vacation of 8 to 16 days. Choose any of the below 9 itineraries in September 2025 and customize it when you contact one of Adventure Life's expert San Juan Islands trip planners.
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Whale watching in Alaska
from $5,700
EBD 10%
EXPLORE

Inside Passage & Glacier Bay Wilderness Cruise

13 Day Itinerary aboard Safari Explorer
  • Enjoy Canada’s Inside Passages
  • Visit Glacier Bay National Park
  • Discover LeConte Bay
  • Watch for whales at Frederick Sound
Starts / Ends
Seattle / Juneau
Activity Level
Variable
Thirteen days take you through the Inside Passages and Glacier Bay National Park, encountering remote wilderness, Native culture, and history. Set sail onboard Safari Explorer searching for the mighty humpback whale, orcas, harbor seals, and Steller's sea lions. Celebrate with a toast to nature's handiwork.
Cruise Details
0
Hatley Castle, Victoria
from $6,977
Save 20%
EXPLORE

Exploring British Columbia and the San Juan Islands

8 Day Itinerary aboard National Geographic Venture
  • Learn the histories of First Nation
  • Search for killer whales
  • Enjoy a private evening event
  • Kayak and hike the wildlife coasts
Starts / Ends
Seattle / Seattle
Activity Level
Variable
Discover the powerful wilderness and warm charm of the Pacific Northwest over a wide-ranging week in the San Juan Islands and British Columbia on an 8-day expedition cruise aboard National Geographic Venture. Explore remote islands and sail through channels that teem with sea life and visit charming towns and First Nations heritage sites.
Cruise Details
0
Aerial view of Juneau, Alaska
from $6,700
EXPLORE

Glacier Bay National Park with Inside Passage and San Juan Islands

13 Day Itinerary aboard Wilderness Legacy
  • Enjoy Canada’s Inside Passages
  • Visit Glacier Bay National Park
  • Discover LeConte Bay
  • Watch for whales at Frederick Sound
Starts / Ends
Seattle / Juneau
Activity Level
Variable
This 13-day adventure on a small ship cruise takes you through the Inside Passage and to Glacier Bay. Seeing whales and other wildlife while paddling or hiking through the wilderness is an unforgettable experience. Over the course of thirteen days, explore Glacier Bay National Park's inside passages as well as the surrounding nature, local culture, and history.
Cruise Details
0
San Juan Islands
from $8,000
EBD 10%
EXPLORE

Cruise To Alaska : Inside Passage with Glacier Bay & Olympic National Park

Seattle - Juneau - 13 Day Itinerary aboard Safari Quest
  • Visit Glacier Bay National Park
  • Experience wilderness kayaking
  • Watch for whales
  • Tour LeConte Bay iceberg gardens
Starts / Ends
Seattle / Juneau
Activities
Stand Up Paddle Boarding
Activity Level
Variable
Cruise Alaska’s and Canada’s Inside Passages and visit Glacier Bay National Park, a UNESCO World Heritage Site during this 13-day adventure aboard Safari Quest. Explore Ketchikan, Thomas Bay, and Chichagof Island.
Cruise Details
0
Calm waters disturbed only by the flick of a whale's tail
from $6,100
EBD 10%
EXPLORE

Inside Passage & Glacier Bay Wilderness Cruise

Juneau -Seattle - 13 Day Itinerary aboard Safari Endeavour
  • Enjoy Canada’s Inside Passages
  • Visit Glacier Bay National Park
  • Discover LeConte Bay
  • Connect with Tlingit culture
  • Watch for whales at Icy Strait
Starts / Ends
Juneau / Seattle
Activities
Kayaking
Activity Level
Variable
On this 13-day small ship tour onboard Safari Endeavour, explore the Inside Passage and Glacier Bay. Whales and wildlife, kayaking, and hiking are just some of the activities available. Thirteen days immerse you in the Inside Passage and Glacier Bay National Park, as well as secluded landscapes, native culture, and history.
Cruise Details
0
Sunken Garden at Butchart Garden, British Columbia
from $5,750
Savings
EXPLORE

Puget Sound & San Juan Islands Cruise

Roundtrip Seattle - 8 Day Itinerary aboard American Constellation
  • Visit Anacortes
  • Traverse the San Juan Islands
  • Visit Butchart Gardens
  • See wildlife in San Juan Islands
Starts / Ends
Seattle / Seattle
Activity Level
Variable
Embark on an 8-day adventure to Puget Sound and the San Juan Islands aboard American Constellation. Cruise to historic coastal towns. Explore wildlife and scenic beauty with excursions to Butchart Gardens and Olympic National Park.
Cruise Details
0
Get up close to amazing glaciers in Alaska
from $10,200
Savings
EXPLORE

Alaska Inside Passage Cruise

Juneau to Seattle - 16 Day Itinerary aboard American Constellation
  • Explore downtown Juneau
  • Watch for Haines wildlife
  • Cruise Glacier Bay National Park
  • Visit Wrangell’s Tlingit sites
Starts / Ends
Juneau / Seattle
Activity Level
Variable
Embark on a 16-day Alaska cruise from Juneau to Seattle aboard American Constellation, exploring historic ports, stunning glaciers, and diverse wildlife. Discover the beauty of Alaska’s Inside Passage in comfort and style.
Cruise Details
0
Sunken Garden at Butchart Garden, British Columbia
from $5,750
Savings
EXPLORE

Puget Sound & San Juan Islands Cruise

Roundtrip Seattle - 8 Day Itinerary aboard American Constitution
  • Visit Anacortes
  • Traverse the San Juan Islands
  • Visit Butchart Gardens
  • Explore cultural heritage
Starts / Ends
Seattle / Seattle
Activities
Wine Tasting
Activity Level
Variable
Embark on an 8-day adventure to Puget Sound and the San Juan Islands aboard American Constitution. Cruise to historic coastal towns. Explore wildlife and scenic beauty with excursions to Butchart Gardens and Olympic National Park. Learn about cultural heritage from Norwegian settlers and the Suquamish tribe.
Cruise Details
0
Get up close to amazing glaciers in Alaska
from $10,200
Savings
EXPLORE

Alaska Inside Passage Cruise

Juneau to Seattle - 16 Day Itinerary aboard American Constitution
  • Walk Juneau’s downtown streets
  • Walk at Petersburg’s fishing docks
  • Discover Haines
  • Cruise the Inside Passage
Starts / Ends
Juneau / Seattle
Activities
Hiking, Village Visits, Whale Watching, Wildlife Viewing, Urban Exploration, Local Market Visits, Archaeological Site Visits
Activity Level
Variable
Embark on a 16-day cruise aboard the American Constitution, sailing through the serene Inside Passage from Washington's Puget Sound to Alaska's southeastern panhandle. Discover historic sites, scenic wonders, and vibrant ports on guided excursions.
Cruise Details
0
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