Indonesia Tours & Cruises in 2026

from $10,885

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Indonesia's Forgotten Islands

Darwin to Singapore - 14 Day Itinerary aboard Heritage Adventurer

• Komodo dragon encounters
• See Orangutans at Camp Leakey
• Discover rare birds and wildlife
• Snorkel at vibrant reefs

Starts / Ends

Darwin / Singapore

Activities

Whale Watching, Wildlife Viewing, Snorkeling

Activity Level

Variable

Travel from Darwin to Singapore on a 14-day cruise through Indonesia aboard Heritage Adventurer. Explore remote islands, snorkel coral reefs, encounter Komodo dragons, visit volcanic lakes, experience tribal cultures, and observe wild orangutans in protected rainforests.

Cruise Details

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from $11,150

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SeaTrek With Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih

• Snorkel Guraici's vibrant reefs
• Discover Bacan’s unique wildlife
• Explore Obi Latu plantations
• Encounter rare Maleo birds

Starts / Ends

Ternate Island / Bitung

Activity Level

Variable

Join this 14-day cruise from Ternate to Bitung aboard the Ombak Putih. Sail past volcanoes, snorkel vibrant reefs, visit remote islands, swim with stingless jellyfish, and encounter whale sharks.

Cruise Details

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from $15,300

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Raja Ampat & Spice Islands Expedition

Sorong to Ambon - 11 Day Itinerary aboard Aqua Blu

• Explore Kali Biru river
• Dive Mayhem Reef thrills
• Explore Banda Neira’s Dutch forts
• Spot dugongs near Nusa Laut

Starts / Ends

Sorong / Ambon Island

Activities

Kayaking, Fishing, Cooking Classes, Festival Visits, Scuba Diving

Activity Level

Variable

Embark on an 11-day luxury cruise through Raja Ampat and the Spice Islands aboard Aqua Blu, visiting Sorong, Mioskon, Yangeffo, Aljui Bay, and Yeben Island. Snorkel with reef sharks and dugongs, explore ancient caves and Dutch forts, and experience local culture in Arborek Village and Nusa Laut.

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from $10,650

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Tropical Indonesian Odyssey

Benoa - Darwin - 13 Day Itinerary aboard Le Soleal

• Spot Komodo dragons on Rinca
• Discover Alor's moko drums
• Walk Bali's rice terraces
• Snorkel at Kei Islands

Starts / Ends

Benoa / Darwin

Activity Level

Variable

Join a 13-day expedition cruise from Benoa, Bali to Darwin, Australia aboard Le Soleal. Visit Komodo National Park, Alor, Flores, and West Papua. Encounter wildlife, snorkel vibrant reefs, and explore remote villages shaped by centuries of culture and history.

Cruise Details

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from $14,600

$1000 SBC

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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier

• See the Coral Triangle’s ecosystems
• Experience Indonesia's culture
• See Komodo dragons upclose
• Island hop around Indonesia
• Discover Triton Bay and Kei Islands

Starts / Ends

Benoa / Darwin

Activity Level

Variable

This 13-day cruise from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.

Cruise Details

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from $10,050

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In Search of Wallace and His Living Treasures with Dr. George Beccaloni

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih

• Explore beautiful Ternate
• Admire unique volcanic islands
• Discover Bacan Island's wildlife
• View Yar Island's flying foxes

Starts / Ends

Ternate Island / Sorong

Activity Level

Variable

This 12-day itinerary honors Alfred Russel Wallace’s observations of zoological differences across a narrow strait in the archipelago, proposing the Wallace Line, which separates the ecozones of Asia and Australia, in collaboration with Dr. George Beccaloni and Fauna & Flora International.

Cruise Details

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from $10,400

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The Wonders of North Maluku: A Snorkelling, Wildlife & Cultural Adventure

Ternate - Ternate - 13 Day Itinerary aboard Katharina

• Discover Makian Island landscapes
• Explore Halmahera's local culture
• Encounter wildlife in Bacan Island
• Discover Ternate’s landmarks

Starts / Ends

Ternate Island / Ternate Island

Activity Level

Variable

Embark on a 13-day cruise aboard the Katharina. Explore North Maluku's islands, forests, and reefs, featuring cultural experiences, wildlife encounters, and snorkeling on pristine beaches.

Cruise Details

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from $8,100

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The Jewels of Raja Ampat

10 Day Itinerary aboard Ombak Putih

• Discover the Misool archipelago
• Explore Tomolol’s dome-topped cave
• Spot the red bird of paradise
• Admire Raja Ampat’s beauty

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Join the Ombak Putih on this exceptional 10-day cruise of Indonesia and explore Raja Ampat. Kayaking and snorkeling are highlights of this itinerary, along with cultural visits to local villages that give you insights into the local way of life, customs, and traditions of life in this region of the world.

Cruise Details

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from $8,100

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Papua's Whale Sharks and Birds of Paradise

Sorong - Kaimana - 10 Day Itinerary aboard Ombak Putih

• Swim under Kitikiti waterfall
• Explore the maze of karst islands
• View birds of paradise in nature
• Enjoy the isolated Ceram Sea

Starts / Ends

Sorong / Triton Bay

Activity Level

Variable

Take a cruise from Sorong to Kaimana in discovering Papua's whale sharks and different bird-of-paradise species aboard the Ombak Putih ship on this 10-day voyage. Visit Dampier Strait, Misool Archipelago, Mainland of Papua, Triton Bay, and Namatote Passage.

Cruise Details

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from $20,090

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Raja Ampat and the Spice Islands

Darwin Roundtrip - 12 Day Itinerary aboard Le Soleal

• Banda Neira history
• Snorkel Raja Ampat reefs
• Visit Kei Islands' white-sand beach
• Learn about Spice Islands culture

Starts / Ends

Darwin / Darwin

Activities

Archaeological Site Visits

Activity Level

Variable

Set sail from Darwin through Indonesia on a 12-day cruise aboard Le Soleal, exploring Banda Neira, Raja Ampat, West Papua, and the Kei Islands. Snorkel coral reefs, hike jungle islands, visit historic spice ports, and swim beneath Kitikiti Waterfall in remote tropical settings.

Cruise Details

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from $8,525

Save $1500

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Secrets of the Coral Triangle

Jayapura to Sorong - 12 Day Itinerary aboard SH Minerva

• Explore Jayapura museums
• Discover Pulau Roon's landscapes
• Meet Kwatisore whale sharks
• Hike Mount Arfak

Starts / Ends

Jayapura / Sorong

Activities

Village Visits, Local Market Visits, Hiking

Activity Level

Variable

Embark on a 12-day cruise across Indonesia’s Papua and Raja Ampat. Explore remote islands, vibrant coral reefs, and rich Papuan culture. Encounter whale sharks in Kwatisore, hike highlands in Baliem Valley, and discover Misool’s Yapap Lagoon. Experience unique wildlife, local traditions, and marine biodiversity.

Cruise Details

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from $6,350

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SeaTrek the Remote Ring of Fire: East of Komodo

Komodo-Alor - 10 Day Itinerary aboard Katharina

• Witness fruit bat skies
• Encounter wild Komodo dragons
• Climb for panoramic views
• Experience local weaving crafts
• Visit historic Portuguese fort

Starts / Ends

Labuan Bajo / Maumere

Activities

Stand Up Paddle Boarding

Activity Level

Variable

Start your trip in Bali, flying to Labuan Bajo for a 10-day exploration of Komodo National Park and beyond aboard the Katharina. See Komodo dragons, snorkel with turtles, visit villages, and experience local landscapes and culture.

Cruise Details

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from $3,698

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Java Highlights

12 Day Itinerary

• Discover the history of Borobudur
• Explore the harbor of Sunda Kelapa
• See Bogor's Botanical Gardens
• Visit Pramban, ancient Hindu temple

Starts / Ends

Yogyakarta / Surabaya

Activity Level

Relaxed

Explore the highlights of Java on this 12-day tour in Asia. Here is a glimpse of what awaits you. Tour Sunda Kelapa harbor and Taman Fatahilla's museums. Discover Bogor's diverse Botanical Gardens before visiting Gunung Mas Tea Plantation. See the world's largest Buddhist temple, Borobudur, and learn into Java's heritage at the Sultan’s Palace.

Tour Details

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from $12,700

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SeaTrek from the Spice Islands to the Dragon Islands (Ternate-Komodo)

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih

• Explore Tidore’s cloves and volcano
• Snorkel Guarici’s vibrant reefs
• Discover Bacan’s unique wildlife
• Witness Taliabu’s war dance
• Explore Banggai local markets
• Drift with majestic manta rays
• See iconic Komodo dragons

Starts / Ends

Ternate Island / Labuan Bajo

Activity Level

Variable

Embark on a 16-day cruise aboard Ombak Putih, exploring Indonesia’s culture, wildlife, and marine beauty. Highlights include historical Ternate, vibrant reefs, Bajau sea nomads, and Komodo dragons, with hikes and village visits.

Cruise Details

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from $15,175

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Asian Island Odyssey

Keelung to Darwin - 19 Day Itinerary aboard Heritage Adventurer

• Visit Yehliu Geopark
• Marvel at Tojoman Lagoo
• Explore Fort Belgica
• Swim with Whale Sharks

Starts / Ends

Taipei / Darwin

Activity Level

Variable

Join this 19-day Asian Island Odyssey, cruising from Taipei to Darwin aboard Heritage Adventurer. Traverse the Tropic of Cancer and the Equator. Explore islands with blue waters, pristine coral gardens, and intriguing wildlife. Highlights include Taiwan’s Yehliu Geopark and Taroko National Park, swimming with Whale Sharks, and more.

Cruise Details

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from $8,100

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Papua's Whale Sharks and Birds of Paradise

Kaimana to Sorong - 10 Day Itinerary aboard Katharina

• Explore Triton Bay
• Snorkel and kayak vibrant waters
• Swim under the Kitikiti waterfall
• Visit Tomolol’s mysterious cave

Starts / Ends

Misool / Sorong

Activity Level

Variable

This 10-day South Pacific cruise aboard Katharina honors naturalist Alfred Russel Wallace, the co-founder of the theory of evolution. This magnificent tour takes you on land and sea to discover what captivated Wallace about this region of the world, especially the magnificent birds of paradise.

Cruise Details

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from $26,999

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Remote Indonesia & Islands Of The Pacific Theatre

Darwin - Lautoka - 23 Day Itinerary aboard Seabourn Pursuit

• Snorkel Raja Ampat reefs
• Birdwatch in Yenwaupnor forests
• Tour WWII sites Rabaul
• Visit Kokas rock art

Starts / Ends

Darwin / Lautoka

Activities

Small Ship Sailing, Spa Relaxation

Activity Level

Variable

Explore the remote Indonesia & Islands of the Pacific Theatre on a 23-day cruise from Darwin to Lautoka aboard Seabourn Pursuit. Snorkel in Raja Ampat, explore WWII sites and witness vibrant cultures across Indonesia, Papua New Guinea, Solomon Islands, and Vanuatu.

Cruise Details

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from $24,300

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Darwin to Lautoka

24 Day Itinerary aboard Silver Cloud

• Learn WWII tunnel network
• Snorkel vibrant coral reefs
• Visit Garove volcanic caldera
• Wandre Lautoka’s botanical gardens

Starts / Ends

Darwin / Lautoka

Activity Level

Variable

Embark on a 24-day cruise aboard Silver Cloud, sailing from Darwin to Lautoka. Explore the untouched beauty and cultural richness of Papua New Guinea, the Solomon Islands, and Vanuatu. Snorkel in the crystal-clear waters off Ali Island and Kennedy Island, and delve into World War II history in Madang and Rabaul.

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