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Indonesia Cruises

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Small ship cruises in Indonesia offer abundant activities and sights, including snorkeling in crystal-clear waters, exploring villages, and spotting wildlife. Sail by traditional villages set against a backdrop of dramatic limestone cliffs on Misool; swim with manta rays and dolphins around Komodo Island; and explore the lush jungles of Bali. The best part is that you can do all this while enjoying the comfort and excellent service of a small ship cruise. The best time for an Indonesia cruise is now! Our Indonesia cruises start from $5,450 to $120,190 for cruises of 8 to 24 days days. Contact us to advise which one suits you best and start planning your trip.
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    • Indonesia
Cruising Adventures! Banda Islands
from $9,850
EXPLORE

SeaTrek The East Indies on a Spice Island Exploration

Maumere-Ambon - 12 Day Itinerary aboard Katharina
Starts / Ends
Maumere / Ambon Island
Activity Level
Variable
Departing from Maumere, this exciting 12-day South Pacific cruise on Katharina visits the remote Banda Islands, where you can wander through the nutmeg plantations before retracing ‘the marine spice route’ north through the Moluccan Islands to the clove plantations of the fabled Sultanate of Ternate.
  • Visit Laratuka's unique churches
  • Explore the Forgotten Islands
  • Snorkel in crystal-clear water
  • Discover Indonesia’s Ring of Fire
Cruise Details
0
Cruising Adventures! Banda Islands
from $9,850
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The East Indies on a Spice Island Exploration

Maumere - Ambon - 12 Day Itinerary aboard Ombak Putih
Starts / Ends
Maumere / Ambon Island
Activities
Local Market Visits
Activity Level
Variable
This 12-day voyage aboard the Ombak Putih invites you to explore tropical islands backed by towering volcanoes and sandy shores. Discover the history of the spice trade from the Moluccas of Eastern Indonesia through China, India, & the Middle East en route to Europe. Sail along stunning volcanic islands interspersed with stops at pristine beaches.
  • Visit Laratuka's unique churches
  • Explore the Forgotten Islands
  • Snorkel in crystal-clear water
  • Discover Indonesia’s Ring of Fire
Cruise Details
0
Komodo Dragons at Komodo National Park Indonesia
from $8,400
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Orangutans and Dragons

Bali - Komodo - 14 Day Itinerary aboard Katharina
Starts / Ends
Bali / Melo Village
Activity Level
Variable
Embark on a 14-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.
  • Learn about Orangutans in Borneo
  • Visit a Dayak community
  • See volcanoes and Komodo dragons
Cruise Details
0
Cruising Adventures! Orangutan
from $8,400
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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Ombak Putih
Starts / Ends
Borneo / Melo Village
Activity Level
Variable
Embark on a 13-day, two-part cruise aboard Ombak Putih and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Fly to Bali and set sail to various islands, exploring the highlights of Komodo along the way.
  • Visit a Dayak community
  • Learn about orangutans in Borneo
  • Snorkel over vibrant coral reefs
  • Spot Komodo dragons
Cruise Details
0
Stand up paddling
from $6,500
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Raja Ampat Liveaboard Kayak Adventure

Small Group Tour - 12 Day Itinerary aboard Jakare
Starts / Ends
Sorong / Sorong
Activity Level
Moderate
Discover the Raja Ampat Islands, West Papua on a 12-day cruise aboard Jakare. Explore tiny islands and dive into activities like kayaking, diving, snorkeling, and SUP. Enjoy adventure and relaxation in one of the world's most stunning locations.
  • Sail to Raja Ampat, West Papua
  • Witness Segaf Islands' azure waters
  • See Wayil Island white-sand beach
  • Visit Balbulol Island lagoon
  • Explore Gam Island marine life
  • Enjoy different water activities
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $5,450
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Katharina
Starts / Ends
Komodo Island / Melo Village
Activity Level
Variable
Spend nine days snorkeling, encountering wildlife, and exploring tropical islands while cruising along Komodo and back aboard Katharina. Begin your journey on Komodo Island and see the Komodo dragons, snorkel on Komodo Park’s best reefs, swim with manta rays, and more. Then visit Rinca Island, which is known for its diverse wildlife.
  • Visit local communities
  • Snorkel along vibrant coral reefs
  • Enjoy a barbecue on the beach
  • Discover unique species
Cruise Details
0
Wild Komodo Dragon in its habitat
from $5,450
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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Ombak Putih
Starts / Ends
Komodo Island / Melo Village
Activity Level
Variable
Spend nine days snorkeling, encountering wildlife, and exploring tropical islands while cruising along Komodo and back aboard Ombak Putih. Begin your journey on Komodo Island and see the Komodo dragons, snorkel on Komodo Park’s best reefs, swim with manta rays, and more. Then visit Rinca Island, which is known for its diverse wildlife.
  • Visit local communities
  • Snorkel along vibrant coral reefs
  • Enjoy a barbecue on the beach
  • Discover unique species
Cruise Details
0
Explore the culture of Indonesia
from $12,710
EXPLORE

Raja Ampat & Spice Islands

Darwin to Sorong - 19 Day Itinerary aboard Coral Geographer
Starts / Ends
Darwin / Sorong
Activity Level
Variable
Set sail on a 19-day cruise aboard Coral Geographer from Darwin through Indonesia’s Spice Islands and Raja Ampat, famed for their ancient cultures, historic forts, and incredible biodiversity. This adventure blends cultural insights and natural wonders.
  • Visit Banda Neira fort
  • Snorkel at Seram and Besar Islands
  • Meet local artisans in Tumbur
  • Chance to swim with whale sharks
Cruise Details
0
Wajag Island, Raja Ampat
from $15,295
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Living Treasures of Raja Ampat & the Spice Islands

Roundtrip Denpasar - 13 Day Itinerary aboard Greg Mortimer
Starts / Ends
Denpasar / Sorong
Activities
Photography Seminars
Activity Level
Variable
Arrive in Bali to begin your 13-day journey, then fly to Sorong for embarkation aboard the Greg Mortimer to explore Raja Ampat and the Moluccas. This trip combines adventure and cultural experiences, with opportunities for diving, birdwatching, and visiting remote villages and historical sites.
  • Visit Wayag Island lagoon
  • Explore Raja Ampat
  • Hike Mount Pindito
  • Discover Banda Neira’s history
Cruise Details
0
Aerial view of Raja Ampat
from $12,195
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Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer
Starts / Ends
Denpasar / Sorong
Activities
Festival Visits
Activity Level
Variable
Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.
  • Explore Cenderawasih Bay
  • Immerse in West Papuan culture
  • Experience Pulau Num lagoons
  • Admire Raja Ampat reefs
  • Discover Wayag’s limestone cliffs
  • Birdwatch in Waigeo
Cruise Details
0
Explore the coral reefs in Indonesia
from $33,990
2for1
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Discover Komodo & The Spice Islands

Denpasar - Darwin - 16 Day Itinerary aboard Scenic Eclipse II
Starts / Ends
Denpasar / Darwin
Activity Level
Variable
Embark on a 16-day cruise from Denpasar to Darwin aboard the Scenic Eclipse II. Trace the paths of intrepid explorers through Indonesia's remote, untouched islands. This once-in-a-lifetime voyage offers incredible wildlife encounters, breathtaking scenery, and captivating cultures.
  • Discover Moyo Island
  • Experience Komodo Island
  • Explore Larantuka
  • Discover Alor Island
Cruise Details
0
Beautiful wild coast of Raja Ampat, Indonesia
from $14,375
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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer
Starts / Ends
Bali / Cairns
Activity Level
Variable
Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Komodo National Park
  • Swim at Triton Bay
Cruise Details
0
Grains and Spices at the market
from $9,850
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The Scents of the Spice Islands

Ambon to Ternate - 12 Day Itinerary aboard Ombak Putih
Starts / Ends
Ambon Island / Ternate Island
Activity Level
Variable
Make your way through the Spice Islands, a magical destination, on this 12-Day South Pacific cruise aboard Ombak Putih. Visit Hitu Lama, Gunung Api, Manipa, and Payahe Bay, to name a few of the marvelous stops on this luxurious cruise through paradise. You will have opportunities to snorkel and view local wildlife along the way.
  • Visit Hitu Lama
  • Snorkel over black lava stream
  • View production of sago
  • Trek towards a forest waterfall
Cruise Details
0
Orangutans
from $17,895
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In the Wake of Wallace: Indonesia & Borneo

Denpasar - Singapore - 16 Day Itinerary aboard Greg Mortimer
Starts / Ends
Denpasar / Singapore
Activity Level
Variable
Set sail on a 16-day cruise from the Indonesian Archipelago to Singapore aboard the Greg Mortimer, exploring diverse islands like Raja Ampat and Wakatobi National Park. Encounter unique wildlife, immerse in local culture, and witness Indonesia's stunning natural beauty.
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $17,895
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In the Wake of Wallace: Indonesia & Borneo

Singapore - Denpasar - 16 Day Itinerary aboard Greg Mortimer
Starts / Ends
Singapore / Denpasar
Activities
Archaeological Site Visits, Wildlife Viewing, Snorkeling, Village Visits, Hiking, Stand Up Paddle Boarding, Kayaking, Scuba Diving, Small Ship Sailing, Whale Watching
Activity Level
Variable
Experience a 16-day cruise from Singapore to Denpasar, exploring Indonesia's rich biodiversity and culture aboard the Greg Mortimer. Witness orangutans in Central Kalimantan, dive in Taka Bonerate National Park and engage with local communities throughout this unique journey.
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Cruise Details
0
from $12,750
EXPLORE

Indonesian Explorer: Bali, Raja Ampat & Papua New Guinea

18 Day Itinerary aboard Heritage Adventurer
Starts / Ends
Denpasar / Cairns
Activity Level
Variable
Admire Indonesia's extraordinary diversity during this unique 18-day cruise aboard the Heritage Adventurer, sailing from Manado all the way to Madang with ample opportunities to explore the stunning submarine landscape by snorkeling, kayaking and more!
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Pegunungan Nature Reserve
  • Swim at Cenderawasih Marine Park
Cruise Details
0
Explore some of Indonesia's 17,000 islands
from $8,920
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Raja Ampat and the Spice Islands

Roundtrip Darwin - 12 Day Itinerary aboard Le Soleal
Starts / Ends
Darwin / Darwin
Activity Level
Variable
Discover Raja Ampat and the Spice Islands on this 12-day cruise aboard the Le Soleal. Explore pristine beaches, vibrant coral reefs, lush rainforests, and historic gems, starting and ending in multicultural Darwin.
  • Explore Darwin's multicultural city
  • Swim at Kei Islands' pristine beach
  • Snorkel Raja Ampat's vibrant reefs
  • Discover Banda Neira's charm
Cruise Details
0
Explore the culture of Indonesia
from $9,800
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Indonesia Ambon and Spice Islands Cruise

8 Day Itinerary aboard Aqua Blu
Starts / Ends
Ambon Island / Ambon Island
Activity Level
Variable
Discover Ambon and the Spice Islands on an 8-day exploration with Aqua Blu. The journey begins and ends in Ambon where you can have an opportunity to trek and watch birds, and makes stops in some of the most stunning islands of Indonesia including Banda Api, Banda Islands, Banda Neira, Nusa Laut, Run Island, and Saparua Island.
  • Discover local pottery-making
  • Stroll through Dutch Fort Belgica
  • Visit old nutmeg plantations
  • Watch out for wildlife
Cruise Details
0
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