Indonesia Small Ship Cruises

from $6,800

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Raja Ampat Liveaboard Kayak Adventure

Small Group Tour - 12 Day Itinerary aboard Jakare

• Sail to Raja Ampat in Indonesia
• Witness Segaf Islands' azure waters
• See Wayil Island white-sand beach
• Visit Balbulol Island lagoon
• Explore Gam Island marine life
• Enjoy different water activities
• Kayak in Raja Ampat on your beach v

Starts / Ends

Sorong / Sorong

Activities

Land & Sea Exploration

Activity Level

Easy Active

Discover the Raja Ampat Islands, West Papua on a 12-day cruise aboard Jakare. Explore tiny islands and dive into activities like kayaking, diving, snorkeling, and SUP. Enjoy adventure and relaxation in one of the world's most stunning locations.

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from $10,050

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SeaTrek The East Indies on a Spice Island Exploration

Maumere-Ambon - 12 Day Itinerary aboard Katharina

• Visit Laratuka's unique churches
• Explore the Forgotten Islands
• Snorkel in crystal-clear water
• Discover Indonesia’s Ring of Fire

Starts / Ends

Maumere / Ambon Island

Activity Level

Variable

Departing from Maumere, this exciting 12-day South Pacific cruise on Katharina visits the remote Banda Islands, where you can wander through the nutmeg plantations before retracing ‘the marine spice route’ north through the Moluccan Islands to the clove plantations of the fabled Sultanate of Ternate.

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from $5,825

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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Ombak Putih

• Visit local communities
• Snorkel along vibrant coral reefs
• Enjoy a barbecue on the beach
• Discover unique species

Starts / Ends

Komodo Island / Melo Village

Activity Level

Variable

Spend nine days snorkeling, encountering wildlife, and exploring tropical islands while cruising along Komodo and back aboard Ombak Putih. Begin your journey on Komodo Island and see the Komodo dragons, snorkel on Komodo Park’s best reefs, swim with manta rays, and more. Then visit Rinca Island, which is known for its diverse wildlife.

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from $8,800

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Orangutans and Dragons

Bali - Komodo - 14 Day Itinerary aboard Katharina

• Learn about Orangutans in Borneo
• Visit a Dayak community
• See volcanoes and Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 14-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

Cruise Details

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from $8,800

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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Ombak Putih

• Visit a Dayak community
• Learn about orangutans in Borneo
• Snorkel over vibrant coral reefs
• Spot Komodo dragons

Starts / Ends

Borneo / Melo Village

Activity Level

Variable

Embark on a 13-day, two-part cruise aboard Ombak Putih and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Fly to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

Cruise Details

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from $5,825

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Whale Sharks, Corals & Dragons

Komodo-Komodo - 9 Day Itinerary aboard Katharina

• Visit local communities
• Snorkel along vibrant coral reefs
• Enjoy a barbecue on the beach
• Discover unique species

Starts / Ends

Komodo Island / Melo Village

Activity Level

Variable

You spend nine days cruising round‑trip from Komodo on board Katharina, seeing Komodo dragons, whale sharks, manta rays, and coral reefs. You snorkel on the reefs, swim with marine animals, and visit islands with diverse wildlife.

Cruise Details

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from $16,340

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Raja Ampat & Spice Islands

Darwin to Sorong - 19 Day Itinerary aboard Coral Geographer

• Visit Banda Neira fort
• Snorkel at Seram and Besar Islands
• Meet local artisans in Tumbur
• Chance to swim with whale sharks

Starts / Ends

Darwin / Sorong

Activities

Kayaking, Hiking

Activity Level

Variable

Set sail on a 19-day cruise aboard Coral Geographer from Darwin through Indonesia’s Spice Islands and Raja Ampat, famed for their ancient cultures, historic forts, and incredible biodiversity. This adventure blends cultural insights and natural wonders.

Cruise Details

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from $12,195

EBD

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Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer

• Explore Cenderawasih Bay
• Immerse in West Papuan culture
• Experience Pulau Num lagoons
• Admire Raja Ampat reefs
• Discover Wayag’s limestone cliffs
• Birdwatch in Waigeo

Starts / Ends

Denpasar / Sorong

Activities

Small Ship Sailing, Scuba Diving, Stand Up Paddle Boarding, Festival Visits

Activity Level

Variable

Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.

Cruise Details

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from $7,900

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Jewels of Raja Ampat

Roundtrip Sorong - 10 Day Itinerary aboard Katharina

• Swim through Tomolol’s Cave
• Trek in Batanta Island's jungle
• Discover pristine coral reefs
• Visit Aljui Bay's Pearl Farm

Activity Level

Variable

Join the Katharina on this exceptional 10-day Jewels of Raja Ampat cruise roundtrip Sorong to explore incredible landscapes and sail across one of the most desired destinations in the world, Indonesia. Relax in this region's natural temples, beaches, and wildlife immersion through snorkeling and kayaking.

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Benoa / Labuan Bajo

Activity Level

Variable

Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.

Cruise Details

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from $10,050

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The Scents of the Spice Islands

Ambon to Ternate - 12 Day Itinerary aboard Ombak Putih

• Visit Hitu Lama
• Snorkel over black lava stream
• View production of sago
• Trek towards a forest waterfall

Starts / Ends

Ambon Island / Ternate Island

Activity Level

Variable

Make your way through the Spice Islands, a magical destination, on this 12-Day South Pacific cruise aboard Ombak Putih. Visit Hitu Lama, Gunung Api, Manipa, and Payahe Bay, to name a few of the marvelous stops on this luxurious cruise through paradise. You will have opportunities to snorkel and view local wildlife along the way.

Cruise Details

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from $10,005

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An Equatorial adventure across North Borneo

Manila - Singapore - 17 Day Itinerary aboard Coral Geographer

• Tour Culion Island history
• Explore Puerto Princesa
• Visit Sepilok Orangutans
• Learn Marinduque traditions
• Visit Brunei’s royal sites

Starts / Ends

Manila / Singapore

Activities

Archaeological Site Visits, Local Market Visits

Activity Level

Variable

Sail from Manila to Singapore aboard Coral Geographer on this 17-day cruise. Visit remote islands in the Philippines, encounter orangutans in Borneo, tour historic cities, and discover diverse cultures. Swim in coral reefs, walk through mangrove forests, and explore vibrant markets and heritage towns.

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from $12,700

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SeaTrek with Corals, Cultures & Dragons with Nicole, Coral Specialist

Bitung - Komodo - 16 Day Itinerary aboard Katharina

• Snorkel vibrant Indonesian reefs
• Meet Bajau sea gypsies
• Swim with whale sharks
• Track Komodo dragons Rinca

Starts / Ends

Bitung / Komodo Island

Activities

Snorkeling, Wildlife Viewing, Village Visits, Whale Watching

Activity Level

Variable

Experience 16 days aboard Katharina from Bitung to Komodo: snorkel vibrant reefs at Punten, Ratatotok, and Malenge. Meet Bajau sea gypsies, explore Wakatobi, swim with stingless jellyfish, visit Bonerate’s traditional shipyards, encounter Komodo dragons, manta rays, and witness breathtaking sunsets at Gili Lawa Darat.

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from $14,375

Save 15%

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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer

• Visit Raja Ampat
• Lookout for the endemic birds
• Explore Komodo National Park
• Swim at Triton Bay

Starts / Ends

Bali / Cairns

Activity Level

Variable

Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.

Cruise Details

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Labuan Bajo / Benoa

Activities

Fishing

Activity Level

Variable

Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.

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from $10,290

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North Raja Ampat Expedition

8 Day Itinerary aboard Aqua Blu

• Visit a local village and bat cave
• Wander the coastline of Cape Kri
• Explore the Pulau Wayag’s islets
• Tour on a pearl farm in Aljui Bay

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.

Cruise Details

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from $8,800

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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Katharina

• Visit a Dayak community
• Learn about orangutans in Borneo
• Snorkel over vibrant coral reefs
• Spot Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 13-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

Cruise Details

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from $11,150

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SeaTrek With Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih

• Snorkel Guraici's vibrant reefs
• Discover Bacan’s unique wildlife
• Explore Obi Latu plantations
• Encounter rare Maleo birds

Starts / Ends

Ternate Island / Bitung

Activity Level

Variable

Join this 14-day cruise from Ternate to Bitung aboard the Ombak Putih. Sail past volcanoes, snorkel vibrant reefs, visit remote islands, swim with stingless jellyfish, and encounter whale sharks.

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