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Indonesia Small Ship Cruises

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    • Indonesia
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $15,100
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Indonesian Explorer: Bali, Raja Ampat & Papua New Guinea

Denpasar to Madang - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Explore Pegunungan Nature Reserve
  • Swim at Cenderawasih Marine Park
  • Search for Buru endemic birds
Starts / Ends
Denpasar / Cairns
Activity Level
Variable
Admire Indonesia's extraordinary diversity during this unique 18-day cruise aboard the Heritage Adventurer, sailing from Manado all the way to Madang with ample opportunities to explore the stunning submarine landscape by snorkeling, kayaking and more!
Cruise Details
0
Sealife at Manuar Island, Raja Ampat, Indonesia
from $11,030
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North Raja Ampat Expedition

8 Day Itinerary aboard Aqua Blu
  • Visit a local village and bat cave
  • Wander the coastline of Cape Kri
  • Explore the Pulau Wayag’s islets
  • Tour on a pearl farm in Aljui Bay
Starts / Ends
Sorong / Sorong
Activity Level
Variable
Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.
Cruise Details
0
Birds of Paradise
from $8,100
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Papua's Whale Sharks and Birds of Paradise

Sorong - Kaimana - 10 Day Itinerary aboard Ombak Putih
  • Swim under Kitikiti waterfall
  • Swim with Triton Bay whale sharks
  • Discover ancient cliff paintings
  • Snorkel among kaleidoscope corals
Starts / Ends
Sorong / Triton Bay
Activities
Stand Up Paddle Boarding
Activity Level
Variable
Immerse in a 10-day Papua cruise aboard the Ombak Putih. Sailing from Sorong to Kaimana, this voyage invites you to snorkel with Triton Bay's whale sharks, spot rare birds of paradise, and discover hidden coves among spectacular karst limestone islands.
Cruise Details
0
Tanah Lot Hindu Temple - Bali
from $8,418
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Panoramas & Pagodas

Singapore to Bali - 10 Day Itinerary aboard Atlas Adventurer
  • Explore Singapore Gardens
  • Visit Borobudur Temples
  • Encounter Komodo Dragons
  • Discover Lombok Culture
Starts / Ends
Singapore / Benoa
Activity Level
Variable
Discover Singapore, Java, Komodo Island, Lombok, and Bali on this 10-day cruise from Singapore to Benoa aboard Atlas Adventurer. Visit historic cities, UNESCO World Heritage sites, volcanic landscapes, cultural landmarks, and island nature reserves. Enjoy scenic cruising across the Java Sea with opportunities to spot marine wildlife.
Cruise Details
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Dive among amazing corals in Indonesia
from $8,419
Save 20%
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The Sunda Passage

Bali to Singapore - 9 Day Itinerary aboard Atlas Adventurer
  • Explore Uluwatu Temple, Bali
  • Explore Java’s Mount Bromo
  • Discover Karimunjawa coral reefs
  • Explore Tioman Island’s coast
Starts / Ends
Benoa / Singapore
Activity Level
Variable
Explore a 9-day cruise from Benoa to Singapore aboard Atlas Adventurer. Visit Bali temples, Mount Bromo, Karimunjawa, Belitung, Tioman Island and Singapore while discovering Indonesian culture, volcanic landscapes, coral reefs, marine life, historic sites, sea turtle conservation and local traditions across Indonesia and Malaysia.
Cruise Details
0
Wilsons Birds of Paradise
from $10,250
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Raja Ampat To the Volcanoes of Maluku

Sorong to Ternate - 12 Day Itinerary aboard Katharina
  • Snorkel Raja Ampat reefs
  • Spot birds of paradise
  • Swim in a jellyfish lake
  • Discover ancient cave arte
  • Visit local island villages
  • See Wallace's Dodinga
Starts / Ends
Sorong / Ternate Island
Activities
Small Ship Sailing
Activity Level
Variable
Embark on a 12-day cruise aboard Katharina from Sorong to Ternate, discovering the wonders of Raja Ampat and the Spice Islands of North Maluku. Snorkel vibrant reefs, trek rainforests to spot birds of paradise, explore ancient cave art, and experience local customs in remote villages.
Cruise Details
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A serene river surrounded by lush green forest in Raja Ampat, Kali Biru, Indonesia.
from $16,550
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Raja Ampat & Spice Islands Expedition

Sorong to Ambon - 11 Day Itinerary aboard Aqua Blu
  • Explore Kali Biru river
  • Dive Mayhem Reef thrills
  • Explore Banda Neira’s Dutch forts
  • Spot dugongs near Nusa Laut
Starts / Ends
Sorong / Ambon Island
Activities
Fishing, Cooking Classes, Festival Visits
Activity Level
Variable
Embark on an 11-day luxury cruise through Raja Ampat and the Spice Islands aboard Aqua Blu, visiting Sorong, Mioskon, Yangeffo, Aljui Bay, and Yeben Island. Snorkel with reef sharks and dugongs, explore ancient caves and Dutch forts, and experience local culture in Arborek Village and Nusa Laut.
Cruise Details
0
Beautiful wild coast of Raja Ampat, Indonesia
from $9,525
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Raja Ampat & Cenderawasih Bay Expedition: Indonesia's Coral Triangle

Sorong Roundtrip - 12 Day Itinerary aboard SH Minerva
  • Snorkel with whale sharks
  • Cruise Kabui Bay by Zodiac
  • Swim Lenmakana Lake with jellyfish
  • Snorkel around Pulau Kri
Starts / Ends
Benoa / Denpasar
Activities
Kayaking, Whale Watching
Activity Level
Variable
Explore Indonesia on an 12-day cruise aboard the SH Minerva through Papua and Raja Ampat. Visit remote islands, snorkel coral reefs, swim with whale sharks, kayak through limestone lagoons, and experience Papuan culture. Discover crystal-clear waters, diverse marine life, and island landscapes across one of the world's richest marine regions.
Cruise Details
0
Balinese sunset, Indonesia
from $9,610
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Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa to Darwin - 13 Day Itinerary aboard Le Jacques Cartier
  • Explore Bali Temples
  • Visit Satonda Lake
  • Spot Saleh Bay whale sharks
  • Snorkel at Triton Bay
Starts / Ends
Benoa / Darwin
Activity Level
Variable
Set sail on a 13-day cruise aboard Le Jacques Cartier from Bali to Darwin and explore Indonesia’s remote islands, coral-rich waters, and cultural treasures. Encounter whale sharks in Saleh Bay, spot Komodo dragons, snorkel in Triton Bay, visit Banda Neira, and discover traditional communities across the archipelago.
Cruise Details
0
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $11,040
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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journey

Benoa, Bali - Darwin - 12 Day Itinerary aboard Le Jacques Cartier
  • See the Coral Triangle’s ecosystems
  • Experience Indonesia's culture
  • See Komodo dragons upclose
  • Island hop around Indonesia
  • Discover Triton Bay and Kei Islands
Starts / Ends
Benoa / Darwin
Activity Level
Variable
This 12-day cruise on Le Jacques Cartier from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.
Cruise Details
0
from $22,020
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North & South Raja Ampat Expedition

Sorong to Sorong - 15 Day Itinerary aboard Aqua Blu
  • Kayak Wayag’s blue lagoons
  • Snorkel Melissa’s Garden
  • Hike Kapatcol for birds
  • Swim with mantas Arborek
Starts / Ends
Sorong / Sorong
Activities
Hiking
Activity Level
Variable
Discover the best of North and South Raja Ampat on a 15-day Aqua Blu cruise, starting in Sorong and visiting remote reefs, jungle trails, and limestone islands. Dive Cape Kri, kayak Wayag’s lagoons, spot birds of paradise, and snorkel with manta rays, all while enjoying onboard comforts.
Cruise Details
0
Wild Komodo Dragon in its habitat
from $11,450
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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier
  • Discover Satonda’s Volcanic Lake
  • Encounter Komodo Dragons
  • Visit Historic Banda Neira
  • Swim Beneath Kitikiti Waterfall
  • Snorkel Vibrant Triton Bay
Starts / Ends
Benoa / Darwin
Activities
Wildlife Viewing, Snorkeling, Scuba Diving, Rainforest Exploration, Village Visits, Archaeological Site Visits, Local Market Visits
Activity Level
Variable
Experience a 13-day expedition aboard Le Jacques Cartier from Benoa, Bali to Darwin, visiting Satonda Island, Saleh Bay, Komodo National Park, and Maumere. Explore Banda Neira, Triton Bay, the Kei Islands, and other remote destinations while encountering remarkable wildlife, reefs, cultures, and landscapes.
Cruise Details
0
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