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Indonesia Small Ship Cruises

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    • Indonesia
Experience snorkeling with a large school of silver fish
from $6,320
EXPLORE

Whale Sharks, Corals & Dragons Family Cruise with a Marine Biologist

Komodo Roundtrip - 9 Day Itinerary aboard Ombak Putih
  • Track wild Komodo dragons
  • Swim with giant whale sharks
  • Spot Komodo dragons
  • Uncover Moyo waterfall
  • Learn from a marine biologist
  • Snorkel vibrant coral reefs
  • Hear birds during forest hikes
  • Play on remote pink beaches
Starts / Ends
Komodo Island / Melo Village
Activity Level
Variable
Enjoy a 9-day family cruise aboard the Ombak Putih, sailing roundtrip through Indonesia from Komodo to Komodo. Led by a marine biologist, you encounter whale sharks, manta rays, and wild Komodo dragons. Discover vibrant reefs, active volcanoes, and local culture.
Cruise Details
0
Explore the culture of Indonesia
from $17,825
Save 30%
EXPLORE

Raja Ampat & Spice Islands

Darwin to Sorong - 19 Day Itinerary aboard Coral Geographer
  • Visit Banda Neira fort
  • Snorkel at Seram and Besar Islands
  • Meet local artisans in Tumbur
  • Chance to swim with whale sharks
Starts / Ends
Darwin / Sorong
Activity Level
Variable
Set sail on a 19-day cruise aboard Coral Geographer from Darwin through Indonesia’s Spice Islands and Raja Ampat, famed for their ancient cultures, historic forts, and incredible biodiversity. This adventure blends cultural insights and natural wonders.
Cruise Details
0
Colorful sunset over Sulawesi
from $10,365
Save 30%
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Island Empires & Ancient Mariners

Darwin to Makassar - 15 Day Itinerary aboard Coral Geographer
  • Explore Komodo Island wildlife
  • Trek Padar Island peak
  • Snorkel vibrant coral reefs
  • Swim Pink Beach waters
Starts / Ends
Darwin / Makassar
Activities
Scuba Diving, Urban Exploration
Activity Level
Variable
Embark on a 15-day cruise through Indonesia aboard Coral Geographer. Explore remote islands, see Komodo dragons, climb Padar Island, witness unique dances, and experience Toraja culture. Swim, snorkel, kayak, and visit traditional villages.
Cruise Details
0
A pair of dragons on Komodo Island
from $11,030
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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Benoa / Labuan Bajo
Activity Level
Variable
Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.
Cruise Details
0
Wild Komodo Dragon in its habitat
from $17,895
EBD
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In the Wake of Wallace: Indonesia & Borneo

Singapore - Denpasar - 16 Day Itinerary aboard Greg Mortimer
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Starts / Ends
Singapore / Denpasar
Activity Level
Variable
Experience a 16-day cruise from Singapore to Denpasar, exploring Indonesia's rich biodiversity and culture aboard the Greg Mortimer. Witness orangutans in Central Kalimantan, dive in Taka Bonerate National Park and engage with local communities throughout this unique journey.
Cruise Details
0
Stingless Jellyfish
from $12,900
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SeaTrek from the Spice Islands to the Dragon Islands

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih
  • Explore Tidore’s cloves and volcano
  • Snorkel Guarici’s vibrant reefs
  • Discover Bacan’s unique wildlife
  • Witness Taliabu’s war dance
  • Explore Banggai local markets
  • Drift with majestic manta rays
  • See iconic Komodo dragons
Starts / Ends
Ternate Island / Komodo Island
Activity Level
Variable
Experience an epic 16-day voyage aboard Ombak Putih from the northern Spice Islands to the southern Dragon Islands. You explore nearly 1,000 miles of Indonesian seas, crossing the equator to discover rare wildlife, remote Sulu Archipelago cultures, and the legendary Komodo dragons through daily snorkeling and land expeditions.
Cruise Details
0
Explore Sulawesi
from $11,350
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Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih
  • Snorkel Guraici coral reefs
  • Hike Bacan Island jungles
  • Engage Bajau sea gypsies
  • Swim with stingless jellyfish
  • Spot flightless Maleo birds
  • Swim with coastal whale sharks
Starts / Ends
Ternate Island / Manado
Activities
Village Visits, Whale Watching
Activity Level
Variable
Embark on a 14-day Indonesian cruise aboard the Ombak Putih from Ternate to Bitung and experience the Rare Species, Remote Cultures & Remarkable Corals itinerary. Snorkel in the vibrant Coral Triangle, swim with gentle whale sharks, and encounter endemic biodiversity alongside indigenous sea communities on this oceanic expedition.
Cruise Details
0
Snorkel in clear blue water above a large whale shark
from $11,350
EXPLORE

Spice Islands to the Whale Sharks

Ambon - Kaimana - 14 Day Itinerary aboard Katharina
  • Discover Banda Archipelago
  • Snorkel off Ceram Coast
  • Visit Kei and Aru Islands
  • Swim with Whale Sharks
  • View Ancient Cave Paintings
Starts / Ends
Ambon Island / Triton Bay
Activities
Small Ship Sailing, Wildlife Viewing, Snorkeling, Rainforest Exploration, Kayaking, Hiking, Local Market Visits, Stand Up Paddle Boarding, Archaeological Site Visits
Activity Level
Variable
Experience the Katharina 14-day cruise from Ambon to Kaimana, exploring the Indonesia Spice Islands to the Whale Sharks. Visit Banda, Kei and Aru Islands, snorkel coral reefs, kayak through lagoons, discover local culture, and swim with whale sharks in Triton Bay.
Cruise Details
0
Experience the unique architecture of Asia.
from $11,030
EXPLORE

Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Labuan Bajo / Benoa
Activities
Fishing
Activity Level
Variable
Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.
Cruise Details
0
Stingless Jellyfish
from $10,400
EXPLORE

Komodo to Maluku with a Marine Biologist

Komodo to Ambon - 13 Day Itinerary aboard Katharina
  • Explore Komodo marine wildlife
  • Experience Bonerate atoll
  • Snorkel Wakatobi reef
  • Bajau sea gypsy visit
  • Meet pinisi shipbuilders
  • Encounter stingless jellyfish
Starts / Ends
Komodo National Park / Ambon Island
Activity Level
Variable
Travel 13 days on Katharina from Komodo to Maluku on a northern Indonesia route. Explore Komodo National Park, Flores Sea, Bonerate Atoll, Wakatobi National Park, the Banda Sea, Sula Archipelago, & Ambon while snorkeling reefs, visiting remote islands, & experiencing coastal communities, guided by experienced tour leaders & marine biologist.
Cruise Details
0
Purple Garden Coral Reefs in Indonesia
from $10,250
EXPLORE

In Search of Wallace and His Living Treasures

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih
  • Discover Wallace’s house in Ternate
  • Visit the historic village Dodinga
  • Discover Bacan Island's wildlife
  • Swim in a stingless jellyfish lake
Starts / Ends
Ternate Island / Sorong
Activity Level
Variable
Embark on a 12-day voyage aboard Ombak Putih following the footsteps of naturalist Alfred Russel Wallace. Travel from Ternate to Sorong, exploring the Guraici Archipelago, Bacan, and Misool while encountering rare Birds of Paradise and vibrant coral reefs.
Cruise Details
0
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $15,100
EXPLORE

Indonesian Explorer: Bali, Raja Ampat & Papua New Guinea

Denpasar to Madang - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Explore Pegunungan Nature Reserve
  • Swim at Cenderawasih Marine Park
  • Search for Buru endemic birds
Starts / Ends
Denpasar / Cairns
Activity Level
Variable
Admire Indonesia's extraordinary diversity during this unique 18-day cruise aboard the Heritage Adventurer, sailing from Manado all the way to Madang with ample opportunities to explore the stunning submarine landscape by snorkeling, kayaking and more!
Cruise Details
0
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