Have questions? We're here.
Two monkeys admire the statues

Indonesia Small Ship Cruises

Travel made your way ™
Talk with an expert
Build your ideal Indonesia trip. Call 800.344.6118
Start Planning My Trip
Filter (51 Results)
  • Start Date
    Months
    Years
  • Length
    to
  • Price
    to
  • Activity Levels
  • Experiences
  • Activities
  • Ships
  • Destinations
    • Indonesia
Aerial view of Raja Ampat
from $12,195
EBD
EXPLORE

Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer
  • Explore Cenderawasih Bay
  • Immerse in West Papuan culture
  • Experience Pulau Num lagoons
  • Admire Raja Ampat reefs
  • Discover Wayag’s limestone cliffs
  • Birdwatch in Waigeo
Starts / Ends
Denpasar / Sorong
Activities
Festival Visits
Activity Level
Variable
Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.
Cruise Details
0
Colorful sunset over Sulawesi
from $10,770
EXPLORE

Island Empires & Ancient Mariners

Darwin to Makassar - 15 Day Itinerary aboard Coral Geographer
  • Explore Komodo Island wildlife
  • Trek Padar Island peak
  • Snorkel vibrant coral reefs
  • Swim Pink Beach waters
Starts / Ends
Darwin / Makassar
Activities
Scuba Diving, Urban Exploration
Activity Level
Variable
Embark on a 15-day cruise through Indonesia aboard Coral Geographer. Explore remote islands, see Komodo dragons, climb Padar Island, witness unique dances, and experience Toraja culture. Swim, snorkel, kayak, and visit traditional villages.
Cruise Details
0
A pair of dragons on Komodo Island
from $11,030
EXPLORE

Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Benoa / Labuan Bajo
Activity Level
Variable
Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.
Cruise Details
0
Orangutans
from $17,895
EBD
EXPLORE

In the Wake of Wallace: Indonesia & Borneo

Denpasar - Singapore - 16 Day Itinerary aboard Greg Mortimer
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Starts / Ends
Denpasar / Singapore
Activity Level
Variable
Set sail on a 16-day cruise from the Indonesian Archipelago to Singapore aboard the Greg Mortimer, exploring diverse islands like Raja Ampat and Wakatobi National Park. Encounter unique wildlife, immerse in local culture, and witness Indonesia's stunning natural beauty.
Cruise Details
0
Wild Komodo Dragon in its habitat
from $17,895
EBD
EXPLORE

In the Wake of Wallace: Indonesia & Borneo

Singapore - Denpasar - 16 Day Itinerary aboard Greg Mortimer
  • Explore Misool’s pristine reefs
  • Discover Buru Island’s villages
  • Snorkel Wakatobi’s coral haven
  • Wander Belitung’s beaches
Starts / Ends
Singapore / Denpasar
Activity Level
Variable
Experience a 16-day cruise from Singapore to Denpasar, exploring Indonesia's rich biodiversity and culture aboard the Greg Mortimer. Witness orangutans in Central Kalimantan, dive in Taka Bonerate National Park and engage with local communities throughout this unique journey.
Cruise Details
0
Stingless Jellyfish
from $12,900
EXPLORE

SeaTrek from the Spice Islands to the Dragon Islands

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih
  • Explore Tidore’s cloves and volcano
  • Snorkel Guarici’s vibrant reefs
  • Discover Bacan’s unique wildlife
  • Witness Taliabu’s war dance
  • Explore Banggai local markets
  • Drift with majestic manta rays
  • See iconic Komodo dragons
Starts / Ends
Ternate Island / Komodo Island
Activity Level
Variable
Experience an epic 16-day voyage aboard Ombak Putih from the northern Spice Islands to the southern Dragon Islands. You explore nearly 1,000 miles of Indonesian seas, crossing the equator to discover rare wildlife, remote Sulu Archipelago cultures, and the legendary Komodo dragons through daily snorkeling and land expeditions.
Cruise Details
0
Beautiful wild coast of Raja Ampat, Indonesia
from $14,375
EXPLORE

Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Komodo National Park
  • Swim at Triton Bay
Starts / Ends
Bali / Cairns
Activity Level
Variable
Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.
Cruise Details
0
Explore Sulawesi
from $11,350
EXPLORE

Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih
  • Snorkel Guraici coral reefs
  • Hike Bacan Island jungles
  • Engage Bajau sea gypsies
  • Swim with stingless jellyfish
  • Spot flightless Maleo birds
  • Swim with coastal whale sharks
Starts / Ends
Ternate Island / Manado
Activities
Village Visits, Whale Watching
Activity Level
Variable
Embark on a 14-day Indonesian cruise aboard the Ombak Putih from Ternate to Bitung and experience the Rare Species, Remote Cultures & Remarkable Corals itinerary. Snorkel in the vibrant Coral Triangle, swim with gentle whale sharks, and encounter endemic biodiversity alongside indigenous sea communities on this oceanic expedition.
Cruise Details
0
Snorkel in clear blue water above a large whale shark
from $11,350
EXPLORE

Spice Islands to the Whale Sharks

Ambon - Kaimana - 14 Day Itinerary aboard Katharina
  • Discover Banda Archipelago
  • Snorkel off Ceram Coast
  • Visit Kei and Aru Islands
  • Swim with Whale Sharks
  • View Ancient Cave Paintings
Starts / Ends
Ambon Island / Triton Bay
Activities
Small Ship Sailing, Wildlife Viewing, Snorkeling, Rainforest Exploration, Kayaking, Hiking, Stand Up Paddle Boarding, Archaeological Site Visits, Local Market Visits
Activity Level
Variable
Experience the Katharina 14-day cruise from Ambon to Kaimana, exploring the Indonesia Spice Islands to the Whale Sharks. Visit Banda, Kei and Aru Islands, snorkel coral reefs, kayak through lagoons, discover local culture, and swim with whale sharks in Triton Bay.
Cruise Details
0
Experience the unique architecture of Asia.
from $11,030
EXPLORE

Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Labuan Bajo / Benoa
Activities
Fishing
Activity Level
Variable
Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.
Cruise Details
0
Stingless Jellyfish
from $10,400
EXPLORE

Komodo to Maluku with a Marine Biologist

Komodo to Ambon - 13 Day Itinerary aboard Katharina
  • Explore Komodo marine wildlife
  • Experience Bonerate atoll
  • Snorkel Wakatobi reef
  • Bajau sea gypsy visit
  • Meet pinisi shipbuilders
  • Encounter stingless jellyfish
Starts / Ends
Komodo National Park / Ambon Island
Activity Level
Variable
Travel 13 days on Katharina from Komodo to Maluku on a northern Indonesia route. Explore Komodo National Park, Flores Sea, Bonerate Atoll, Wakatobi National Park, the Banda Sea, Sula Archipelago, & Ambon while snorkeling reefs, visiting remote islands, & experiencing coastal communities, guided by experienced tour leaders & marine biologist.
Cruise Details
0
Purple Garden Coral Reefs in Indonesia
from $10,050
EXPLORE

In Search of Wallace and His Living Treasures

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih
  • Discover Wallace’s house in Ternate
  • Visit the historic village Dodinga
  • Discover Bacan Island's wildlife
  • Swim in a stingless jellyfish lake
Starts / Ends
Ternate Island / Sorong
Activity Level
Variable
Embark on a 12-day voyage aboard Ombak Putih following the footsteps of naturalist Alfred Russel Wallace. Travel from Ternate to Sorong, exploring the Guraici Archipelago, Bacan, and Misool while encountering rare Birds of Paradise and vibrant coral reefs.
Cruise Details
0
13-24 of 51 Results

Relax. We've got this.

Talk with an expert trip planner 800.344.6118

Plan My Trip
Shannon Fischer-Kendro Adventure Life employee profile
Shannon K.
Two monkeys admire the statues
Indonesia

Chat Indonesia with a specialist

Our team is waiting and ready to talk with you about your next adventure. So go ahead and book an appointment with one of our specialized trip planners.

Let's Chat
800.344.6118

Where is your next adventure?

Contact Chat Call

Why Travel With Us?

We Save You Time and Stress

Skip the endless research and information overload—our deep destination expertise helps you design a more seamless trip in a fraction of the time.

Unbiased Cruise Expertise

We're not tied to any one cruise line, so you receive honest guidance on the best ship and itinerary for you—not a sales pitch.

Rewards That Go Further

Secure your 5% Past Traveler Rewards across a wide range of ships and destinations - not a single brand and not just cruises.

As Featured In

How it Works

Connect

No cost, no commitment. Talk with our experts about your dream trip.

Plan

Share your travel style—we match you with the right itinerary or create one just for you.

Book

Lock in knowing every detail is handled and you’re fully supported.

Travel

Enjoy a seamless journey—and unlock 5% off your next adventure.