Two monkeys admire the statues

Indonesia Small Ship Cruises

Travel made your way ™
Talk with an expert
Build your ideal Indonesia trip. Call 800.344.6118
Start Planning My Trip
Filter (49 Results)
  • Start Date
    Months
    Years
  • Length
    to
  • Price
    to
  • Activity Levels
  • Experiences
  • Activities
  • Ships
  • Destinations
    • Indonesia
Sealife at Manuar Island, Raja Ampat, Indonesia
from $11,030
EXPLORE

North Raja Ampat Expedition

8 Day Itinerary aboard Aqua Blu
  • Visit a local village and bat cave
  • Wander the coastline of Cape Kri
  • Explore the Pulau Wayag’s islets
  • Tour on a pearl farm in Aljui Bay
Starts / Ends
Sorong / Sorong
Activity Level
Variable
Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.
Cruise Details
0
Birds of Paradise
from $8,100
EXPLORE

Papua's Whale Sharks and Birds of Paradise

Sorong - Kaimana - 10 Day Itinerary aboard Ombak Putih
  • Swim under Kitikiti waterfall
  • Swim with Triton Bay whale sharks
  • Discover ancient cliff paintings
  • Snorkel among kaleidoscope corals
Starts / Ends
Sorong / Triton Bay
Activity Level
Variable
Immerse in a 10-day Papua cruise aboard the Ombak Putih. Sailing from Sorong to Kaimana, this voyage invites you to snorkel with Triton Bay's whale sharks, spot rare birds of paradise, and discover hidden coves among spectacular karst limestone islands.
Cruise Details
0
Tanah Lot Hindu Temple - Bali
from $8,419
EXPLORE

Panoramas & Pagodas

Singapore to Bali - 10 Day Itinerary aboard Atlas Adventurer
  • Explore Singapore Gardens
  • Visit Borobudur Temples
  • Encounter Komodo Dragons
  • Discover Lombok Culture
Starts / Ends
Singapore / Benoa
Activity Level
Variable
Discover Singapore, Java, Komodo Island, Lombok, and Bali on this 10-day cruise from Singapore to Benoa aboard Atlas Adventurer. Visit historic cities, UNESCO World Heritage sites, volcanic landscapes, cultural landmarks, and island nature reserves. Enjoy scenic cruising across the Java Sea with opportunities to spot marine wildlife.
Cruise Details
0
Dive among amazing corals in Indonesia
from $8,143
EXPLORE

The Sunda Passage

Bali to Singapore - 9 Day Itinerary aboard Atlas Adventurer
  • Explore Uluwatu Temple, Bali
  • Explore Java’s Mount Bromo
  • Discover Karimunjawa coral reefs
  • Explore Tioman Island’s coast
Starts / Ends
Benoa / Singapore
Activity Level
Variable
Explore a 9-day cruise from Benoa to Singapore aboard Atlas Adventurer. Visit Bali temples, Mount Bromo, Karimunjawa, Belitung, Tioman Island and Singapore while discovering Indonesian culture, volcanic landscapes, coral reefs, marine life, historic sites, sea turtle conservation and local traditions across Indonesia and Malaysia.
Cruise Details
0
Wilsons Birds of Paradise
from $10,250
EXPLORE

Raja Ampat To the Volcanoes of Maluku

Sorong to Ternate - 12 Day Itinerary aboard Katharina
  • Snorkel Raja Ampat reefs
  • Spot birds of paradise
  • Swim in a jellyfish lake
  • Discover ancient cave arte
  • Visit local island villages
  • See Wallace's Dodinga
Starts / Ends
Sorong / Ternate Island
Activities
Small Ship Sailing
Activity Level
Variable
Embark on a 12-day cruise aboard Katharina from Sorong to Ternate, discovering the wonders of Raja Ampat and the Spice Islands of North Maluku. Snorkel vibrant reefs, trek rainforests to spot birds of paradise, explore ancient cave art, and experience local customs in remote villages.
Cruise Details
0
A serene river surrounded by lush green forest in Raja Ampat, Kali Biru, Indonesia.
from $16,550
EXPLORE

Raja Ampat & Spice Islands Expedition

Sorong to Ambon - 11 Day Itinerary aboard Aqua Blu
  • Explore Kali Biru river
  • Dive Mayhem Reef thrills
  • Explore Banda Neira’s Dutch forts
  • Spot dugongs near Nusa Laut
Starts / Ends
Sorong / Ambon Island
Activities
Fishing, Cooking Classes, Festival Visits
Activity Level
Variable
Embark on an 11-day luxury cruise through Raja Ampat and the Spice Islands aboard Aqua Blu, visiting Sorong, Mioskon, Yangeffo, Aljui Bay, and Yeben Island. Snorkel with reef sharks and dugongs, explore ancient caves and Dutch forts, and experience local culture in Arborek Village and Nusa Laut.
Cruise Details
0
Beautiful wild coast of Raja Ampat, Indonesia
from $10,650
EXPLORE

Raja Ampat & Cenderawasih Bay Expedition: Indonesia's Coral Triangle

Sorong Roundtrip - 12 Day Itinerary aboard SH Minerva
  • Snorkel with whale sharks
  • Cruise Kabui Bay by Zodiac
  • Swim Lenmakana Lake with jellyfish
  • Snorkel around Pulau Kri
Starts / Ends
Benoa / Denpasar
Activities
Kayaking, Whale Watching
Activity Level
Variable
Explore Indonesia on an 12-day cruise aboard the SH Minerva through Papua and Raja Ampat. Visit remote islands, snorkel coral reefs, swim with whale sharks, kayak through limestone lagoons, and experience Papuan culture. Discover crystal-clear waters, diverse marine life, and island landscapes across one of the world's richest marine regions.
Cruise Details
0
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $14,660
EXPLORE

Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journey

Benoa, Bali - Darwin - 12 Day Itinerary aboard Le Jacques Cartier
  • See the Coral Triangle’s ecosystems
  • Experience Indonesia's culture
  • See Komodo dragons upclose
  • Island hop around Indonesia
  • Discover Triton Bay and Kei Islands
Starts / Ends
Benoa / Darwin
Activity Level
Variable
This 12-day cruise on Le Jacques Cartier from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.
Cruise Details
0
from $22,020
EXPLORE

North & South Raja Ampat Expedition

Sorong to Sorong - 15 Day Itinerary aboard Aqua Blu
  • Kayak Wayag’s blue lagoons
  • Snorkel Melissa’s Garden
  • Hike Kapatcol for birds
  • Swim with mantas Arborek
Starts / Ends
Sorong / Sorong
Activities
Hiking
Activity Level
Variable
Discover the best of North and South Raja Ampat on a 15-day Aqua Blu cruise, starting in Sorong and visiting remote reefs, jungle trails, and limestone islands. Dive Cape Kri, kayak Wayag’s lagoons, spot birds of paradise, and snorkel with manta rays, all while enjoying onboard comforts.
Cruise Details
0
Wild Komodo Dragon in its habitat
from $12,080
EXPLORE

Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier
  • Discover Satonda’s Volcanic Lake
  • Encounter Komodo Dragons
  • Visit Historic Banda Neira
  • Swim Beneath Kitikiti Waterfall
  • Snorkel Vibrant Triton Bay
Starts / Ends
Benoa / Darwin
Activities
Wildlife Viewing, Snorkeling, Scuba Diving, Rainforest Exploration, Village Visits, Local Market Visits, Archaeological Site Visits
Activity Level
Variable
Experience a 13-day expedition aboard Le Jacques Cartier from Benoa, Bali to Darwin, visiting Satonda Island, Saleh Bay, Komodo National Park, and Maumere. Explore Banda Neira, Triton Bay, the Kei Islands, and other remote destinations while encountering remarkable wildlife, reefs, cultures, and landscapes.
Cruise Details
0
Cruising Adventures! Snorkeling
from $10,600
EXPLORE

The Wonders of Maluku

Ternate - Ternate - 13 Day Itinerary aboard Katharina
  • Visit Dodinga's historic village
  • Search for Birds of Paradise
  • Meet Bajau Sea Gypsy communities
  • Snorkel Guraici Archipelago reefs
  • Explore Ternate and Tidore Islands
Starts / Ends
Ternate Island / Ternate Island
Activities
Stand Up Paddle Boarding
Activity Level
Variable
Embark on a 13-day Indonesia cruise aboard Katharina, sailing from Ternate to Ternate. You will explore remote islands, snorkel unexplored reefs, and visit historic Sultanates. Discover the unique wildlife of Bacan Island and experience cultural traditions in local villages like Dodinga and Bastiong.
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $10,200
EXPLORE

Immersive Indonesia: Singapore to Australia

Singapore to Australia - 14 Day Itinerary aboard M/S Paul Gauguin
  • Relax on Parai Beach
  • Discover ancient Semarang
  • Experience Bali’s culture
  • See Komodo dragons up close
Starts / Ends
Singapore / Darwin
Activities
Spa Relaxation, Urban Exploration
Activity Level
Variable
Cruise from Singapore to Darwin on a 14-day M/S Paul Gauguin adventure, visiting lively cities, beautiful beaches, and must-see spots like Bali, Komodo Island, and Timor-Leste. Relax onboard with great food, entertainment, and amazing views along the way.
Cruise Details
0
25-36 of 49 Results

Real experience. Honest advice.

Talk with an expert trip planner 800.344.6118

Plan My Trip
Mary Curry Adventure Life employee profile
Mary C.
Two monkeys admire the statues
Indonesia

Chat Indonesia with a specialist

Our team is waiting and ready to talk with you about your next adventure. So go ahead and book an appointment with one of our specialized trip planners.

Let's Chat
800.344.6118

Where is your next adventure?

Contact Chat Call

Why Travel With Us?

Expert Guidance

With deep destination expertise in complex travel, we advise on how to maximize your time, avoid common pitfalls, and get the most out of every part of your trip.

One Seamless Journey

We bring cruise and land together into a single, well-orchestrated experience—so your trip feels cohesive, not pieced together.

Rewards That Go Further

Secure your 5% Past Traveler Rewards across a wide range of ships and destinations - not a single brand and not just cruises.

As Featured In

How it Works

Connect

No cost, no commitment. Talk with our experts about your dream trip.

Plan

Share your travel style—we match you with the right itinerary or create one just for you.

Book

Lock in knowing every detail is handled and you’re fully supported.

Travel

Enjoy a seamless journey—and unlock 5% off your next adventure.