Indonesia Small Ship Cruises

from $15,300

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Raja Ampat & Spice Islands Expedition

Sorong to Ambon - 11 Day Itinerary aboard Aqua Blu

• Explore Kali Biru river
• Dive Mayhem Reef thrills
• Explore Banda Neira’s Dutch forts
• Spot dugongs near Nusa Laut

Starts / Ends

Sorong / Ambon Island

Activities

Festival Visits, Fishing, Cooking Classes

Activity Level

Variable

Embark on an 11-day luxury cruise through Raja Ampat and the Spice Islands aboard Aqua Blu, visiting Sorong, Mioskon, Yangeffo, Aljui Bay, and Yeben Island. Snorkel with reef sharks and dugongs, explore ancient caves and Dutch forts, and experience local culture in Arborek Village and Nusa Laut.

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from $10,050

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In Search of Wallace and His Living Treasures with Dr. George Beccaloni

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih

• Explore beautiful Ternate
• Admire unique volcanic islands
• Discover Bacan Island's wildlife
• View Yar Island's flying foxes

Starts / Ends

Ternate Island / Sorong

Activity Level

Variable

This 12-day itinerary honors Alfred Russel Wallace’s observations of zoological differences across a narrow strait in the archipelago, proposing the Wallace Line, which separates the ecozones of Asia and Australia, in collaboration with Dr. George Beccaloni and Fauna & Flora International.

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from $10,400

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The Wonders of North Maluku: A Snorkelling, Wildlife & Cultural Adventure

Ternate - Ternate - 13 Day Itinerary aboard Katharina

• Discover Makian Island landscapes
• Explore Halmahera's local culture
• Encounter wildlife in Bacan Island
• Discover Ternate’s landmarks

Starts / Ends

Ternate Island / Ternate Island

Activity Level

Variable

Embark on a 13-day cruise aboard the Katharina. Explore North Maluku's islands, forests, and reefs, featuring cultural experiences, wildlife encounters, and snorkeling on pristine beaches.

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from $7,900

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The Jewels of Raja Ampat

10 Day Itinerary aboard Ombak Putih

• Discover the Misool archipelago
• Explore Tomolol’s dome-topped cave
• Spot the red bird of paradise
• Admire Raja Ampat’s beauty

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Join the Ombak Putih on this exceptional 10-day cruise of Indonesia and explore Raja Ampat. Kayaking and snorkeling are highlights of this itinerary, along with cultural visits to local villages that give you insights into the local way of life, customs, and traditions of life in this region of the world.

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from $7,900

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Papua's Whale Sharks and Birds of Paradise

Sorong - Kaimana - 10 Day Itinerary aboard Ombak Putih

• Swim under Kitikiti waterfall
• Explore the maze of karst islands
• View birds of paradise in nature
• Enjoy the isolated Ceram Sea

Starts / Ends

Sorong / Triton Bay

Activity Level

Variable

Take a cruise from Sorong to Kaimana in discovering Papua's whale sharks and different bird-of-paradise species aboard the Ombak Putih ship on this 10-day voyage. Visit Dampier Strait, Misool Archipelago, Mainland of Papua, Triton Bay, and Namatote Passage.

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from $21,380

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North & South Raja Ampat Expedition

Sorong to Sorong - 15 Day Itinerary aboard Aqua Blu

• Kayak Wayag’s blue lagoons
• Snorkel Melissa’s Garden
• Hike Kapatcol for birds
• Swim with mantas Arborek

Starts / Ends

Sorong / Sorong

Activities

Kayaking

Activity Level

Variable

Discover the best of North and South Raja Ampat on a 15-day Aqua Blu cruise, starting in Sorong and visiting remote reefs, jungle trails, and limestone islands. Dive Cape Kri, kayak Wayag’s lagoons, spot birds of paradise, and snorkel with manta rays, all while enjoying onboard comforts.

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from $8,525

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Secrets of the Coral Triangle

Jayapura to Sorong - 12 Day Itinerary aboard SH Minerva

• Explore Jayapura museums
• Discover Pulau Roon's landscapes
• Meet Kwatisore whale sharks
• Hike Mount Arfak

Starts / Ends

Jayapura / Sorong

Activities

Village Visits, Whale Watching, Wildlife Viewing, Snorkeling, Local Market Visits, Hiking, Archaeological Site Visits

Activity Level

Variable

Embark on a 12-day cruise across Indonesia’s Papua and Raja Ampat. Explore remote islands, vibrant coral reefs, and rich Papuan culture. Encounter whale sharks in Kwatisore, hike highlands in Baliem Valley, and discover Misool’s Yapap Lagoon. Experience unique wildlife, local traditions, and marine biodiversity.

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from $7,050

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Immersive Indonesia: Singapore to Australia

Singapore to Australia - 14 Day Itinerary aboard M/S Paul Gauguin

• Relax on Parai Beach
• Discover ancient Semarang
• Experience Bali’s culture
• See Komodo dragons up close

Starts / Ends

Singapore / Darwin

Activities

Urban Exploration, Spa Relaxation

Activity Level

Variable

Cruise from Singapore to Darwin on a 14-day M/S Paul Gauguin adventure, visiting lively cities, beautiful beaches, and must-see spots like Bali, Komodo Island, and Timor-Leste. Relax onboard with great food, entertainment, and amazing views along the way.

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from $6,350

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SeaTrek the Remote Ring of Fire: East of Komodo

Komodo-Alor - 10 Day Itinerary aboard Katharina

• Witness fruit bat skies
• Encounter wild Komodo dragons
• Climb for panoramic views
• Experience local weaving crafts
• Visit historic Portuguese fort

Starts / Ends

Labuan Bajo / Maumere

Activity Level

Variable

Start your trip in Bali, flying to Labuan Bajo for a 10-day exploration of Komodo National Park and beyond aboard the Katharina. See Komodo dragons, snorkel with turtles, visit villages, and experience local landscapes and culture.

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from $12,700

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SeaTrek from the Spice Islands to the Dragon Islands (Ternate-Komodo)

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih

• Explore Tidore’s cloves and volcano
• Snorkel Guarici’s vibrant reefs
• Discover Bacan’s unique wildlife
• Witness Taliabu’s war dance
• Explore Banggai local markets
• Drift with majestic manta rays
• See iconic Komodo dragons

Starts / Ends

Ternate Island / Labuan Bajo

Activity Level

Variable

Embark on a 16-day cruise aboard Ombak Putih, exploring Indonesia’s culture, wildlife, and marine beauty. Highlights include historical Ternate, vibrant reefs, Bajau sea nomads, and Komodo dragons, with hikes and village visits.

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from $15,175

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Asian Island Odyssey: Cruising the Remote Islands of the Philippines & Indonesia, Taipei to Darwin

19 Day Itinerary aboard Heritage Adventurer

• Visit Yehliu Geopark
• Marvel at Tojoman Lagoo
• Explore Fort Belgica
• Swim with Whale Sharks

Starts / Ends

Taipei / Darwin

Activity Level

Variable

Join this 19-day Asian Island Odyssey, cruising from Taipei to Darwin aboard Heritage Adventurer. Traverse the Tropic of Cancer and the Equator. Explore islands with blue waters, pristine coral gardens, and intriguing wildlife. Highlights include Taiwan’s Yehliu Geopark and Taroko National Park, swimming with Whale Sharks, and more.

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from $8,100

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Papua's Whale Sharks and Birds of Paradise

Kaimana to Sorong - 10 Day Itinerary aboard Katharina

• Explore Triton Bay
• Snorkel and kayak vibrant waters
• Swim under the Kitikiti waterfall
• Visit Tomolol’s mysterious cave

Starts / Ends

Misool / Sorong

Activity Level

Variable

This 10-day South Pacific cruise aboard Katharina honors naturalist Alfred Russel Wallace, the co-founder of the theory of evolution. This magnificent tour takes you on land and sea to discover what captivated Wallace about this region of the world, especially the magnificent birds of paradise.

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from $10,180

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Crossing Oceania: Fiji to Bali

Lautoka to Benoa - 21 Day Itinerary aboard M/S Paul Gauguin

• Hike Koroyanitu National Park
• Snorkel Espiritu Santo reefs
• Discover Komodo dragon habitat
• Visit Ubud’s Sacred Monkey

Starts / Ends

Lautoka / Benoa

Activities

Scuba Diving

Activity Level

Variable

Embark on a 21-day Oceania cruise from Fiji to Bali aboard MS Paul Gauguin. Hike Koroyanitu National Park, snorkel Espiritu Santo, visit Guadalcanal’s WWII sites, explore Komodo, tour Ubud’s temples, enjoy Polynesian dance, and optional cooking classes and spa indulgence.

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from $8,800

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Orangutans and Dragons

Bali - Komodo - 14 Day Itinerary aboard Ombak Putih

• Learn about Orangutans in Borneo
• Visit a Dayak community
• See volcanoes and Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 14-day, two-part cruise aboard Ombak Putih and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

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from $8,800

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Ancient Villages, Textiles, Dragons, and Vibrant Coral Reefs

Ende-Alor - 15 Day Itinerary aboard Katharina

• Explore Flores weaving villages
• Experience Kelimutu crater lakes
• Snorkel vibrant coral reefs
• Encounter wild Komodo dragons
• Uncover Solor Island
• Observe Uma Pura’s ikat textiles
• Spot the resident dugong Mawar

Starts / Ends

Ende / Alor Island

Activities

Stand Up Paddle Boarding, Wine Tasting, Small Ship Sailing

Activity Level

Variable

Discover Indonesia’s highlights on a 15-day journey from Ende to Alor, combining a 5-day overland and a 10-day sea cruise aboard the Katharina. Experience adventure, culture, and nature with expert guides as you explore Flores’s landscapes and the marine wonders of Komodo and Alor.

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