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Indonesia Small Ship Cruises

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Aerial view of Raja Ampat
from $12,195
EBD
EXPLORE

Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer
  • Explore Cenderawasih Bay
  • Immerse in West Papuan culture
  • Experience Pulau Num lagoons
  • Admire Raja Ampat reefs
  • Discover Wayag’s limestone cliffs
  • Birdwatch in Waigeo
Starts / Ends
Denpasar / Sorong
Activities
Festival Visits
Activity Level
Variable
Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.
Cruise Details
0
Colorful sunset over Sulawesi
from $10,655
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Island Empires & Ancient Mariners

Darwin to Makassar - 15 Day Itinerary aboard Coral Geographer
  • Explore Komodo Island wildlife
  • Trek Padar Island peak
  • Snorkel vibrant coral reefs
  • Swim Pink Beach waters
Starts / Ends
Darwin / Makassar
Activities
Scuba Diving, Urban Exploration
Activity Level
Variable
Embark on a 15-day cruise through Indonesia aboard Coral Geographer. Explore remote islands, see Komodo dragons, climb Padar Island, witness unique dances, and experience Toraja culture. Swim, snorkel, kayak, and visit traditional villages.
Cruise Details
0
A pair of dragons on Komodo Island
from $10,530
20% OFF
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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Benoa / Labuan Bajo
Activity Level
Variable
Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.
Cruise Details
0
Wilsons Birds of Paradise
from $10,250
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Raja Ampat To the Volcanoes of Maluku

Sorong to Ternate - 12 Day Itinerary aboard Katharina
  • Snorkel Raja Ampat reefs
  • Spot birds of paradise
  • Swim in a jellyfish lake
  • Discover ancient cave arte
  • Visit local island villages
  • See Wallace's Dodinga
Starts / Ends
Sorong / Ternate Island
Activity Level
Variable
Embark on a 12-day cruise aboard Katharina from Sorong to Ternate, discovering the wonders of Raja Ampat and the Spice Islands of North Maluku. Snorkel vibrant reefs, trek rainforests to spot birds of paradise, explore ancient cave art, and experience local customs in remote villages.
Cruise Details
0
Stingless Jellyfish
from $12,900
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SeaTrek from the Spice Islands to the Dragon Islands

Ternate to Komodo - 16 Day Itinerary aboard Ombak Putih
  • Explore Tidore’s cloves and volcano
  • Snorkel Guarici’s vibrant reefs
  • Discover Bacan’s unique wildlife
  • Witness Taliabu’s war dance
  • Explore Banggai local markets
  • Drift with majestic manta rays
  • See iconic Komodo dragons
Starts / Ends
Ternate Island / Komodo Island
Activity Level
Variable
Experience an epic 16-day voyage aboard Ombak Putih from the northern Spice Islands to the southern Dragon Islands. You explore nearly 1,000 miles of Indonesian seas, crossing the equator to discover rare wildlife, remote Sulu Archipelago cultures, and the legendary Komodo dragons through daily snorkeling and land expeditions.
Cruise Details
0
Beautiful wild coast of Raja Ampat, Indonesia
from $14,375
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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Lookout for the endemic birds
  • Explore Komodo National Park
  • Swim at Triton Bay
Starts / Ends
Bali / Cairns
Activity Level
Variable
Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.
Cruise Details
0
Explore Sulawesi
from $11,350
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Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih
  • Snorkel Guraici coral reefs
  • Hike Bacan Island jungles
  • Engage Bajau sea gypsies
  • Swim with stingless jellyfish
  • Spot flightless Maleo birds
  • Swim with coastal whale sharks
Starts / Ends
Ternate Island / Manado
Activities
Whale Watching
Activity Level
Variable
Embark on a 14-day Indonesian cruise aboard the Ombak Putih from Ternate to Bitung and experience the Rare Species, Remote Cultures & Remarkable Corals itinerary. Snorkel in the vibrant Coral Triangle, swim with gentle whale sharks, and encounter endemic biodiversity alongside indigenous sea communities on this oceanic expedition.
Cruise Details
0
Snorkel in clear blue water above a large whale shark
from $11,350
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Spice Islands to the Whale Sharks

Ambon - Kaimana - 14 Day Itinerary aboard Katharina
  • Discover Banda Archipelago
  • Snorkel off Ceram Coast
  • Visit Kei and Aru Islands
  • Swim with Whale Sharks
  • View Ancient Cave Paintings
Starts / Ends
Ambon Island / Triton Bay
Activities
Small Ship Sailing, Wildlife Viewing, Snorkeling, Rainforest Exploration, Kayaking, Hiking, Stand Up Paddle Boarding, Local Market Visits, Archaeological Site Visits
Activity Level
Variable
Experience the Katharina 14-day cruise from Ambon to Kaimana, exploring the Indonesia Spice Islands to the Whale Sharks. Visit Banda, Kei and Aru Islands, snorkel coral reefs, kayak through lagoons, discover local culture, and swim with whale sharks in Triton Bay.
Cruise Details
0
Experience the unique architecture of Asia.
from $10,530
20% OFF
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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu
  • Experience Pink Beach
  • Observe Komodo dragons
  • Enjoy the view of Sangeang volcano
  • Encounter friendly whale sharks
Starts / Ends
Labuan Bajo / Benoa
Activities
Fishing
Activity Level
Variable
Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.
Cruise Details
0
Coral Reefs of Indonesia
from $10,200
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Komodo to Maluku with Marine Biologist

Komodo - Ambon - 13 Day Itinerary aboard Ombak Putih
  • See Komodo dragons on Rinca
  • Explore remote shipyards
  • Visit Wakatobi National Park
  • Swim with jellyfish
  • Engage with Kadai tribe
Starts / Ends
Komodo Island / Ambon Island
Activities
Village Visits, Volunteering
Activity Level
Variable
Explore Indonesia aboard Ombak Putih on this 13-day voyage from Komodo to Ambon. You visit Komodo National Park, Bonerate Archipelago, Wakatobi National Park, the Sula Archipelago, and Maluku while snorkeling coral reefs, encountering wildlife, and meeting local island communities.
Cruise Details
0
Purple Garden Coral Reefs in Indonesia
from $10,050
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In Search of Wallace and His Living Treasures

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih
  • Discover Wallace’s house in Ternate
  • Visit the historic village Dodinga
  • Discover Bacan Island's wildlife
  • Swim in a stingless jellyfish lake
Starts / Ends
Ternate Island / Sorong
Activity Level
Variable
Embark on a 12-day voyage aboard Ombak Putih following the footsteps of naturalist Alfred Russel Wallace. Travel from Ternate to Sorong, exploring the Guraici Archipelago, Bacan, and Misool while encountering rare Birds of Paradise and vibrant coral reefs.
Cruise Details
0
Breathtaking aerial sunset in Komodo National Park in Indonesia
from $15,100
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Indonesian Explorer: Bali, Raja Ampat & Papua New Guinea

Denpasar to Madang - 18 Day Itinerary aboard Heritage Adventurer
  • Visit Raja Ampat
  • Explore Pegunungan Nature Reserve
  • Swim at Cenderawasih Marine Park
  • Search for Buru endemic birds
Starts / Ends
Denpasar / Cairns
Activity Level
Variable
Admire Indonesia's extraordinary diversity during this unique 18-day cruise aboard the Heritage Adventurer, sailing from Manado all the way to Madang with ample opportunities to explore the stunning submarine landscape by snorkeling, kayaking and more!
Cruise Details
0
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