Indonesia Tours & Cruises in 2026

from $12,195

EBD

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Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer

• Explore Cenderawasih Bay
• Immerse in West Papuan culture
• Experience Pulau Num lagoons
• Admire Raja Ampat reefs
• Discover Wayag’s limestone cliffs
• Birdwatch in Waigeo

Starts / Ends

Denpasar / Sorong

Activity Level

Variable

Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.

Cruise Details

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from $8,100

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Jewels of Raja Ampat

Roundtrip Sorong - 10 Day Itinerary aboard Katharina

• Swim through Tomolol’s Cave
• Trek in Batanta Island's jungle
• Discover pristine coral reefs
• Visit Aljui Bay's Pearl Farm

Activity Level

Variable

Join the Katharina on this exceptional 10-day Jewels of Raja Ampat cruise roundtrip Sorong to explore incredible landscapes and sail across one of the most desired destinations in the world, Indonesia. Relax in this region's natural temples, beaches, and wildlife immersion through snorkeling and kayaking.

Cruise Details

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from $32,060

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Raja Ampat, West Papua, & Forgotten Islands Expedition

Sorong to Labuan Bajo - 22 Day Itinerary aboard Aqua Blu

• Dive Wayag’s Figure Eight Rock
• Explore Banda Neira’s Dutch forts
• Experience Melissa’s Garden
• Observe Abui Tribe’s dance
• Tour Fort Revenge on Pulau Ai

Starts / Ends

Sorong / Labuan Bajo

Activities

Fishing, Festival Visits

Activity Level

Variable

Embark on a 22-day cruise aboard Aqua Blu through Raja Ampat, West Papua, and the Forgotten Islands, starting in Sorong and sailing to Mioskon, Aljui Bay, Wayag, Penemu, and Banda Neira. Discover vibrant reefs, ancient forts, remote villages, and rich marine life from Pulau Koon to Alor, Maumere, and Labuan Bajo.

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from $10,180

Save 35%

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Island Empires & Ancient Mariners

Darwin to Makassar - 15 Day Itinerary aboard Coral Geographer

• Explore Komodo Island wildlife
• Trek Padar Island peak
• Snorkel vibrant coral reefs
• Swim Pink Beach waters

Starts / Ends

Darwin / Makassar

Activities

Scuba Diving, Hiking, Local Market Visits, Urban Exploration

Activity Level

Variable

Embark on a 15-day cruise through Indonesia aboard Coral Geographer. Explore remote islands, see Komodo dragons, climb Padar Island, witness unique dances, and experience Toraja culture. Swim, snorkel, kayak, and visit traditional villages.

Cruise Details

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Benoa / Labuan Bajo

Activity Level

Variable

Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.

Cruise Details

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from $944

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Authentic Toraja

5 Day Itinerary

• Tour around Sengkang
• See picturesque scene in Tempe Lake
• Visit Lemo, famous for hanging tomb
• Explore the unusual tombs in Londa

Starts / Ends

Makassar / Makassar

Activity Level

Relaxed

Discover the Authentic Toraja on this 5-day tour in Asia. Visit Sengkang, known for its silk weaving, or board a jolloro in Rammang Rammang, a traditional local canoe, and cruise along the Pute River. Drive through the spectacular scenery of rice terraces and enjoy the view from Puncak Paredean. Meet ethnic groups, visit Kete Kesu and many more!

Tour Details

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from $10,250

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Raja Ampat To the Volcanoes of Maluku

Sorong to Ternate - 12 Day Itinerary aboard Katharina

• Snorkel Raja Ampat reefs
• Spot birds of paradise
• Visit Mioskon Island
• Explore Waisai village
• Discover Misool caves
• Experience Maluku culture

Starts / Ends

Sorong / Ternate Island

Activities

Snorkeling, Kayaking, Small Ship Sailing, Wildlife Viewing, Village Visits, Archaeological Site Visits, Stand Up Paddle Boarding

Activity Level

Variable

Discover Indonesia on Katharina over 12 days from Sorong to Ternate. Snorkel vibrant reefs, spot birds of paradise, explore remote villages, and experience local culture in Raja Ampat and the Maluku Islands.

Cruise Details

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from $10,050

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The Scents of the Spice Islands

Ambon to Ternate - 12 Day Itinerary aboard Ombak Putih

• Visit Hitu Lama
• Snorkel over black lava stream
• View production of sago
• Trek towards a forest waterfall

Starts / Ends

Ambon Island / Ternate Island

Activity Level

Variable

Make your way through the Spice Islands, a magical destination, on this 12-Day South Pacific cruise aboard Ombak Putih. Visit Hitu Lama, Gunung Api, Manipa, and Payahe Bay, to name a few of the marvelous stops on this luxurious cruise through paradise. You will have opportunities to snorkel and view local wildlife along the way.

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from $10,720

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An Equatorial adventure across North Borneo

Manila - Singapore - 17 Day Itinerary aboard Coral Geographer

• Tour Culion Island history
• Explore Puerto Princesa
• Visit Sepilok Orangutans
• Learn Marinduque traditions
• Visit Brunei’s royal sites

Starts / Ends

Manila / Singapore

Activity Level

Variable

Sail from Manila to Singapore aboard Coral Geographer on this 17-day cruise. Visit remote islands in the Philippines, encounter orangutans in Borneo, tour historic cities, and discover diverse cultures. Swim in coral reefs, walk through mangrove forests, and explore vibrant markets and heritage towns.

Cruise Details

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from $17,895

EBD

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In the Wake of Wallace: Indonesia & Borneo

Denpasar - Singapore - 16 Day Itinerary aboard Greg Mortimer

• Explore Misool’s pristine reefs
• Discover Buru Island’s villages
• Snorkel Wakatobi’s coral haven
• Wander Belitung’s beaches

Starts / Ends

Denpasar / Singapore

Activity Level

Variable

Set sail on a 16-day cruise from the Indonesian Archipelago to Singapore aboard the Greg Mortimer, exploring diverse islands like Raja Ampat and Wakatobi National Park. Encounter unique wildlife, immerse in local culture, and witness Indonesia's stunning natural beauty.

Cruise Details

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from $17,895

EBD

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In the Wake of Wallace: Indonesia & Borneo

Singapore - Denpasar - 16 Day Itinerary aboard Greg Mortimer

• Explore Misool’s pristine reefs
• Discover Buru Island’s villages
• Snorkel Wakatobi’s coral haven
• Wander Belitung’s beaches

Starts / Ends

Singapore / Denpasar

Activity Level

Variable

Experience a 16-day cruise from Singapore to Denpasar, exploring Indonesia's rich biodiversity and culture aboard the Greg Mortimer. Witness orangutans in Central Kalimantan, dive in Taka Bonerate National Park and engage with local communities throughout this unique journey.

Cruise Details

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from $12,700

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SeaTrek with Corals, Cultures & Dragons with Nicole, Coral Specialist

Bitung - Komodo - 16 Day Itinerary aboard Katharina

• Snorkel vibrant Indonesian reefs
• Meet Bajau sea gypsies
• Swim with whale sharks
• Track Komodo dragons Rinca

Starts / Ends

Bitung / Komodo Island

Activities

Whale Watching

Activity Level

Variable

Experience 16 days aboard Katharina from Bitung to Komodo: snorkel vibrant reefs at Punten, Ratatotok, and Malenge. Meet Bajau sea gypsies, explore Wakatobi, swim with stingless jellyfish, visit Bonerate’s traditional shipyards, encounter Komodo dragons, manta rays, and witness breathtaking sunsets at Gili Lawa Darat.

Cruise Details

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from $14,375

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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer

• Visit Raja Ampat
• Lookout for the endemic birds
• Explore Komodo National Park
• Swim at Triton Bay

Starts / Ends

Bali / Cairns

Activity Level

Variable

Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.

Cruise Details

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Labuan Bajo / Benoa

Activity Level

Variable

Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.

Cruise Details

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from $10,220

NO SS

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Spice Islands & South Raja Ampat Expedition

Ambon to Ambon - 8 Day Itinerary aboard Aqua Blu

• Explore Banda Neira forts
• Dive Pulau Koon Reefs
• Spot birds in Kapatcol
• Snorkel Fibiacet Island

Starts / Ends

Ambon Island / Ambon Island

Activity Level

Variable

Sail on an 8-day Aqua Blu cruise through Indonesia’s Spice Islands and South Raja Ampat, exploring vibrant reefs, historic forts, and remote lagoons. Dive Pulau Koon, kayak Wayil, visit jellyfish lakes, spot rare wildlife, and discover the untouched beauty of the Banda Sea and Raja Ampat.

Cruise Details

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from $10,710

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North Raja Ampat Expedition

8 Day Itinerary aboard Aqua Blu

• Visit a local village and bat cave
• Wander the coastline of Cape Kri
• Explore the Pulau Wayag’s islets
• Tour on a pearl farm in Aljui Bay

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.

Cruise Details

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from $8,800

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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Katharina

• Visit a Dayak community
• Learn about orangutans in Borneo
• Snorkel over vibrant coral reefs
• Spot Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 13-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

Cruise Details

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from $5,697

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The Unforgettable Komodo

5 Day Itinerary

• Explore Kelor Island
• Discover Rinca Island
• See marine life in Pink beach
• Explore Manta Point

Starts / Ends

Labuan Bajo / Labuan Bajo

Activity Level

Relaxed

Discover Komodo on this unforgettable 5-day tour in Indonesia. Enjoy snorkeling on Kelor Island, Pink Beach, and Manta Point. See dragons and wildlife on Rinca Island while trekking, and more. This tour guarantees memories that last a lifetime.

Tour Details

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