Indonesia Tours & Cruises in 2026

from $10,060

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An Equatorial adventure across North Borneo

Manila - Singapore - 17 Day Itinerary aboard Coral Geographer

• Tour Culion Island history
• Explore Puerto Princesa
• Visit Sepilok Orangutans
• Learn Marinduque traditions
• Visit Brunei’s royal sites

Starts / Ends

Manila / Singapore

Activity Level

Variable

Sail from Manila to Singapore aboard Coral Geographer on this 17-day cruise. Visit remote islands in the Philippines, encounter orangutans in Borneo, tour historic cities, and discover diverse cultures. Swim in coral reefs, walk through mangrove forests, and explore vibrant markets and heritage towns.

Cruise Details

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from $12,195

EBD

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Idyllic Raja Ampat & Cenderawasih Bay

Roundtrip Denpasar - 10 Day Itinerary aboard Greg Mortimer

• Explore Cenderawasih Bay
• Immerse in West Papuan culture
• Experience Pulau Num lagoons
• Admire Raja Ampat reefs
• Discover Wayag’s limestone cliffs
• Birdwatch in Waigeo

Starts / Ends

Denpasar / Sorong

Activity Level

Variable

Uncover Indonesia’s Cenderawasih Bay and Raja Ampat on a 10-day cruise aboard the Greg Mortimer. After flying from Denpasar to Sorong, explore pristine islands, snorkel with whale sharks, dive in biodiverse waters, and experience local cultures, including visits to Wayag and Waigeo islands.

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from $12,700

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SeaTrek with Corals, Cultures & Dragons with Nicole, Coral Specialist

Bitung - Komodo - 16 Day Itinerary aboard Katharina

• Snorkel vibrant Indonesian reefs
• Meet Bajau sea gypsies
• Swim with whale sharks
• Track Komodo dragons Rinca

Starts / Ends

Bitung / Komodo Island

Activities

Village Visits, Whale Watching, Wildlife Viewing, Snorkeling

Activity Level

Variable

Experience 16 days aboard Katharina from Bitung to Komodo: snorkel vibrant reefs at Punten, Ratatotok, and Malenge. Meet Bajau sea gypsies, explore Wakatobi, swim with stingless jellyfish, visit Bonerate’s traditional shipyards, encounter Komodo dragons, manta rays, and witness breathtaking sunsets at Gili Lawa Darat.

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from $29,790

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Raja Ampat, West Papua, & Forgotten Islands Expedition

Sorong to Labuan Bajo - 22 Day Itinerary aboard Aqua Blu

• Dive Wayag’s Figure Eight Rock
• Explore Banda Neira’s Dutch forts
• Experience Melissa’s Garden
• Observe Abui Tribe’s dance
• Tour Fort Revenge on Pulau Ai

Starts / Ends

Sorong / Labuan Bajo

Activities

Fishing, Festival Visits

Activity Level

Variable

Embark on a 22-day cruise aboard Aqua Blu through Raja Ampat, West Papua, and the Forgotten Islands, starting in Sorong and sailing to Mioskon, Aljui Bay, Wayag, Penemu, and Banda Neira. Discover vibrant reefs, ancient forts, remote villages, and rich marine life from Pulau Koon to Alor, Maumere, and Labuan Bajo.

Cruise Details

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from $14,375

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Indonesian Explorer: Raja Ampat to Papua New Guinea

Bali - Port Moresby - 18 Day Itinerary aboard Heritage Adventurer

• Visit Raja Ampat
• Lookout for the endemic birds
• Explore Komodo National Park
• Swim at Triton Bay

Starts / Ends

Bali / Cairns

Activity Level

Variable

Aboard Heritage Adventurer on this 18-day expedition cruise to Indonesia's remote and little-known tropical islands, from Raja Ampat to Papua New Guinea, see whale sharks in Triton Bay, visit Komodo National Park, home to the famed Komodo Dragon, and more.

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Bali to Komodo National Park - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Benoa / Labuan Bajo

Activity Level

Variable

Aqua Blu invites you on this 8-day exploration of Indonesia's beautiful Komodo National Park, from Benoa, Bali to Labuan Bajo. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. You'll also have chances to snorkel in the turquoise blue waters along the way.

Cruise Details

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from $17,895

EBD

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In the Wake of Wallace: Indonesia & Borneo

Denpasar - Singapore - 16 Day Itinerary aboard Greg Mortimer

• Explore Misool’s pristine reefs
• Discover Buru Island’s villages
• Snorkel Wakatobi’s coral haven
• Wander Belitung’s beaches

Starts / Ends

Denpasar / Singapore

Activity Level

Variable

Set sail on a 16-day cruise from the Indonesian Archipelago to Singapore aboard the Greg Mortimer, exploring diverse islands like Raja Ampat and Wakatobi National Park. Encounter unique wildlife, immerse in local culture, and witness Indonesia's stunning natural beauty.

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from $17,895

EBD

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In the Wake of Wallace: Indonesia & Borneo

Singapore - Denpasar - 16 Day Itinerary aboard Greg Mortimer

• Explore Misool’s pristine reefs
• Discover Buru Island’s villages
• Snorkel Wakatobi’s coral haven
• Wander Belitung’s beaches

Starts / Ends

Singapore / Denpasar

Activities

Stand Up Paddle Boarding, Small Ship Sailing, Hiking

Activity Level

Variable

Experience a 16-day cruise from Singapore to Denpasar, exploring Indonesia's rich biodiversity and culture aboard the Greg Mortimer. Witness orangutans in Central Kalimantan, dive in Taka Bonerate National Park and engage with local communities throughout this unique journey.

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from $5,696

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The Unforgettable Komodo

5 Day Itinerary

• Explore Kelor Island
• Discover Rinca Island
• See marine life in Pink beach
• Explore Manta Point

Starts / Ends

Labuan Bajo / Labuan Bajo

Activity Level

Relaxed

Discover Komodo on this unforgettable 5-day tour in Indonesia. Enjoy snorkeling on Kelor Island, Pink Beach, and Manta Point. See dragons and wildlife on Rinca Island while trekking, and more. This tour guarantees memories that last a lifetime.

Tour Details

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from $8,800

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Orangutans and Dragons

Bali-Komodo - 13 Day Itinerary aboard Katharina

• Visit a Dayak community
• Learn about orangutans in Borneo
• Snorkel over vibrant coral reefs
• Spot Komodo dragons

Starts / Ends

Bali / Melo Village

Activity Level

Variable

Embark on a 13-day, two-part cruise aboard Katharina and explore the rich wildlife and cultural heritage of Indonesia. Explore Borneo and visit an orangutan conservation center and a local Dayak village. Return to Bali and set sail to various islands, exploring the highlights of Komodo along the way.

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from $10,220

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Indonesia - Bali & Komodo National Park Cruise

Komodo National Park to Bali - 8 Day Itinerary aboard Aqua Blu

• Experience Pink Beach
• Observe Komodo dragons
• Enjoy the view of Sangeang volcano
• Encounter friendly whale sharks

Starts / Ends

Labuan Bajo / Benoa

Activity Level

Variable

Aqua Blu invites you on this 8-day luxury cruise to Indonesia's beautiful Komodo National Park, from Labuan Bajo to Benoa, Bali. Explore these wild islands and see the famed Komodo Dragons in their natural habitat. Experience the underwater world of this archipelago by snorkeling or diving.

Cruise Details

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from $10,220

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Spice Islands & South Raja Ampat Expedition

Ambon to Ambon - 8 Day Itinerary aboard Aqua Blu

• Explore Banda Neira forts
• Dive Pulau Koon Reefs
• Spot birds in Kapatcol
• Snorkel Fibiacet Island

Starts / Ends

Ambon Island / Ambon Island

Activities

Kayaking, Scuba Diving, Archaeological Site Visits

Activity Level

Variable

Sail on an 8-day Aqua Blu cruise through Indonesia’s Spice Islands and South Raja Ampat, exploring vibrant reefs, historic forts, and remote lagoons. Dive Pulau Koon, kayak Wayil, visit jellyfish lakes, spot rare wildlife, and discover the untouched beauty of the Banda Sea and Raja Ampat.

Cruise Details

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from $1,592

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Sanur Beach Retreat

4-6 Day Itinerary

• Relax in the beach town of Sanur
• Explore local homes and workshops
• Take a stand-up paddleboard lesson
• Enjoy a Balinese massage

Activities

Spa Relaxation

Activity Level

Relaxed

Enjoy a resort stay on the beautiful and relaxed Sanur Beach on the eastern side of the Bukit Peninsula in Bali. This old beach resort town has a more relaxed feel and offers a great oasis for a beach vacation in Bali. Enjoy 4 nights at Griya Santrian resort, visit Ubud, and try stand up paddleboarding at Jimbaran Beach to top off your Bali tour.

Tour Details

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from $10,710

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North Raja Ampat Expedition

8 Day Itinerary aboard Aqua Blu

• Visit a local village and bat cave
• Wander the coastline of Cape Kri
• Explore the Pulau Wayag’s islets
• Tour on a pearl farm in Aljui Bay

Starts / Ends

Sorong / Sorong

Activity Level

Variable

Discover the islands of Raja Ampat in Indonesia on this 8-day cruise with luxurious Aqua Blu. Look out for unique wildlife and enjoy relaxing landscapes on this amazing journey through some of the most pristine islands of Indonesia.

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from $11,150

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SeaTrek With Rare Species, Remote Cultures & Remarkable Corals

Ternate - Bitung - 14 Day Itinerary aboard Ombak Putih

• Snorkel Guraici's vibrant reefs
• Discover Bacan’s unique wildlife
• Explore Obi Latu plantations
• Encounter rare Maleo birds

Starts / Ends

Ternate Island / Bitung

Activity Level

Variable

Join this 14-day cruise from Ternate to Bitung aboard the Ombak Putih. Sail past volcanoes, snorkel vibrant reefs, visit remote islands, swim with stingless jellyfish, and encounter whale sharks.

Cruise Details

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from $10,650

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Tropical Indonesian Odyssey

Benoa - Darwin - 13 Day Itinerary aboard Le Soleal

• Spot Komodo dragons on Rinca
• Discover Alor's moko drums
• Walk Bali's rice terraces
• Snorkel at Kei Islands

Starts / Ends

Benoa / Darwin

Activities

Local Market Visits

Activity Level

Variable

Join a 13-day expedition cruise from Benoa, Bali to Darwin, Australia aboard Le Soleal. Visit Komodo National Park, Alor, Flores, and West Papua. Encounter wildlife, snorkel vibrant reefs, and explore remote villages shaped by centuries of culture and history.

Cruise Details

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from $14,600

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Voyage to Indonesia: Dragons, Reefs, and the Spice Islands – with Smithsonian Journeys

Benoa, Bali - Darwin - 13 Day Itinerary aboard Le Jacques Cartier

• See the Coral Triangle’s ecosystems
• Experience Indonesia's culture
• See Komodo dragons upclose
• Island hop around Indonesia
• Discover Triton Bay and Kei Islands

Starts / Ends

Benoa / Darwin

Activity Level

Variable

This 13-day cruise from Bali to northern Australia explores the Coral Triangle’s rich biodiversity. Discover Indonesia’s cultural heritage from Sumbawa's villages to the historic Spice Islands. Highlights include Komodo National Park’s Komodo dragons, snorkeling around Flores and Alor, and diving in West Papua’s Triton Bay.

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from $10,050

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In Search of Wallace and His Living Treasures with Dr. George Beccaloni

Ternate - Sorong - 12 Day Itinerary aboard Ombak Putih

• Explore beautiful Ternate
• Admire unique volcanic islands
• Discover Bacan Island's wildlife
• View Yar Island's flying foxes

Starts / Ends

Ternate Island / Sorong

Activity Level

Variable

This 12-day itinerary honors Alfred Russel Wallace’s observations of zoological differences across a narrow strait in the archipelago, proposing the Wallace Line, which separates the ecozones of Asia and Australia, in collaboration with Dr. George Beccaloni and Fauna & Flora International.

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