Have questions? We're here.
Two monkeys admire the statues

Indonesia Small Ship Cruises

Travel made your way ™
Talk with an expert
Build your ideal Indonesia trip. Call 800.344.6118
Start Planning My Trip
Filter (51 Results)
  • Start Date
    Months
    Years
  • Length
    to
  • Price
    to
  • Activity Levels
  • Experiences
  • Activities
  • Ships
  • Destinations
    • Indonesia
Cruising Adventures! Snorkeling
from $10,600
EXPLORE

The Wonders of Maluku

Ternate - Ternate - 13 Day Itinerary aboard Katharina
  • Visit Dodinga's historic village
  • Search for Birds of Paradise
  • Meet Bajau Sea Gypsy communities
  • Snorkel Guraici Archipelago reefs
  • Explore Ternate and Tidore Islands
Starts / Ends
Ternate Island / Ternate Island
Activities
Stand Up Paddle Boarding, Small Ship Sailing
Activity Level
Variable
Embark on a 13-day Indonesia cruise aboard Katharina, sailing from Ternate to Ternate. You will explore remote islands, snorkel unexplored reefs, and visit historic Sultanates. Discover the unique wildlife of Bacan Island and experience cultural traditions in local villages like Dodinga and Bastiong.
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $8,270
$1000 SBC
EXPLORE

Immersive Indonesia: Singapore to Australia

Singapore to Australia - 14 Day Itinerary aboard M/S Paul Gauguin
  • Relax on Parai Beach
  • Discover ancient Semarang
  • Experience Bali’s culture
  • See Komodo dragons up close
Starts / Ends
Singapore / Darwin
Activities
Urban Exploration
Activity Level
Variable
Cruise from Singapore to Darwin on a 14-day M/S Paul Gauguin adventure, visiting lively cities, beautiful beaches, and must-see spots like Bali, Komodo Island, and Timor-Leste. Relax onboard with great food, entertainment, and amazing views along the way.
Cruise Details
0
The unique landscape of the Chocolate Hills
from $9,525
Upgrade
EXPLORE

Raja Ampat and Philippines: The Last Paradise on Earth

Sorong to Manila - 13 Day Itinerary aboard SH Minerva
  • Snorkel and dive Raja Ampat reefs
  • Visit Bohol tarsier sanctuary
  • Snorkel Fam Islands reefs
  • Hike Piaynemo scenic viewpoint
Starts / Ends
Sanur / Manila
Activity Level
Variable
Embark on a 13-day cruise aboard SH Minerva in Sorong. Explore Raja Ampat through snorkeling, diving, village visits, and scenic hikes. Continue to the Philippines, visiting Casulian Island, Surigao, Bohol, Cuatro Islas, Marinduque, and Manila. Spot marine wildlife, discover coral reefs, and experience island culture across two archipelagos.
Cruise Details
0
Colorful sunset over Sulawesi
from $12,142
Save 20%
EXPLORE

Island Treasures

Benoa (Bali) - Manila - 14 Day Itinerary aboard Atlas Adventurer
  • Explore Bali Temples
  • Discover Borneo Wildlife
  • Visit Palawan Lagoons
  • Explore Manila Heritage
Starts / Ends
Benoa / Metro Manila
Activities
Kayaking
Activity Level
Variable
Discover Indonesia, Malaysia, and the Philippines on this 14-day cruise from Bali, Indonesia to Manila, Philippines aboard Atlas Adventurer. Visit Moyo Island, Makassar, the Derawan Islands, Borneo, Palawan, El Nido, Boracay, and Corregidor Island while enjoying scenic cruising and opportunities to explore wildlife, reefs, and UNESCO sites.
Cruise Details
0
Scenic view of the islands in the Raja Ampat archipelago
from $11,540
EXPLORE

South Raja Ampat Expedition

Sorong to Sorong - 8 Day Itinerary aboard Aqua Blu
  • Tour mysterious Tomolol Cave
  • Dive vibrant Daram reefs
  • Trek lush Kapatcol forests
  • Scout the wild Crocodile River
Starts / Ends
Sorong / Sorong
Activity Level
Variable
Board Aqua Blu for an 8-day South Raja Ampat expedition from Sorong. Dive Misool’s vibrant reefs, kayak Boo Island lagoons, and trek Kapatcol forests for birds of paradise. This journey offers exclusive access to remote marine biodiversity and karst landscapes. Experience world-class snorkeling and diving in Indonesia’s Coral Triangle.
Cruise Details
0
Digyo Island, Philippines, with palm trees, beaches, and turquoise lagoons
from $18,675
EXPLORE

Paradise Passage: From the Philippines to Raja Ampat

Manila to Sorong - 13 Day Itinerary aboard SH Minerva
  • Explore LayLay Port Marinduque
  • Visit sandbars at Digyo Island
  • Ride Zodiacs in Kabui Bay
  • Snorkel around Cape Kri
Starts / Ends
Manila / Denpasar
Activities
Village Visits, Snorkeling, Wildlife Viewing, Rainforest Exploration, Scuba Diving, Hiking
Activity Level
Variable
Board SH Minerva in Manila for a 13-day cruise across the Philippines and Indonesia. In the Philippines, explore historic Intramuros, view tarsiers in Bohol, and walk the sandbars of Digyo Island. Sail across the sea to Sorong to enter Raja Ampat. Ride Zodiacs through Kabui Bay, and hike Piaynemo peak on Pulau Penemu.
Cruise Details
0
Loboc river in the rainforest Philippines, Bohol
from $15,950
EXPLORE

Asian Island Odyssey

Keelung to Darwin - 19 Day Itinerary aboard Heritage Adventurer
  • Visit Yehliu Geopark
  • Marvel at Tojoman Lagoo
  • Explore Fort Belgica
  • Swim with Whale Sharks
Starts / Ends
Taipei / Darwin
Activity Level
Variable
Join this 19-day Asian Island Odyssey, cruising from Taipei to Darwin aboard Heritage Adventurer. Traverse the Tropic of Cancer and the Equator. Explore islands with blue waters, pristine coral gardens, and intriguing wildlife. Highlights include Taiwan’s Yehliu Geopark and Taroko National Park, swimming with Whale Sharks, and more.
Cruise Details
0
Aerial view of the city of Bangkok
from $14,476
Save 20%
EXPLORE

Jewels of Southest Asia

Laem Chabang - Benoa (Bali) - 15 Day Itinerary aboard Atlas Adventurer
  • Visit Bangkok Temples
  • Explore Vietnam Heritage
  • Discover Singapore Gardens
  • Experience Bali Culture
Starts / Ends
Bangkok / Benoa
Activity Level
Variable
Explore Southeast Asia on this 15-day cruise from Bangkok, Thailand to Bali, Indonesia aboard Atlas Adventurer. Visit Cambodia, Vietnam, Singapore, and Indonesia, discover UNESCO World Heritage sites, experience scenic cruising across the South China Sea and Java Sea, and explore temples, markets, islands, and coastal landscapes.
Cruise Details
0
Remote lagoon in Papua New Guinea
from $23,714
EXPLORE

Remote Indonesia & Islands Of The Pacific Theatre

Darwin - Lautoka - 23 Day Itinerary aboard Seabourn Pursuit
  • Snorkel Raja Ampat reefs
  • Birdwatch in Yenwaupnor forests
  • Tour WWII sites Rabaul
  • Visit Kokas rock art
Starts / Ends
Darwin / Lautoka
Activity Level
Variable
Explore the remote Indonesia & Islands of the Pacific Theatre on a 23-day cruise from Darwin to Lautoka aboard Seabourn Pursuit. Snorkel in Raja Ampat, explore WWII sites and witness vibrant cultures across Indonesia, Papua New Guinea, Solomon Islands, and Vanuatu.
Cruise Details
0
Boats on a Phuket beach
from $12,964
Save 20%
EXPLORE

Isles of Spice & Sapphire Seas

Phuket - Victoria (Mahe) - 16 Day Itinerary aboard Atlas Adventurer
  • Explore Phuket Landmarks
  • Visit Sri Lanka Wildlife
  • Discover Kochi Heritage
  • Experience Seychelles Nature
Starts / Ends
Phuket / Victoria
Activities
Whale Watching, Local Market Visits, Spa Relaxation, Archaeological Site Visits
Activity Level
Variable
Discover the Indian Ocean on this 16-day cruise from Phuket, Thailand to Mahe, Seychelles aboard Atlas Adventurer. Visit Indonesia, Sri Lanka, India, the Maldives, and the Seychelles, discover UNESCO World Heritage sites, experience scenic ocean crossings, and explore temples, beaches, wildlife, coral reefs, and coastal cities.
Cruise Details
0
Mountain Range in Komodo National Park, Indonesia
from $10,820
$1000 SBC
EXPLORE

Crossing Oceania: Fiji to Bali

Lautoka to Benoa - 21 Day Itinerary aboard M/S Paul Gauguin
  • Hike Koroyanitu National Park
  • Snorkel Espiritu Santo reefs
  • Discover Komodo dragon habitat
  • Visit Ubud’s Sacred Monkey
Starts / Ends
Lautoka / Benoa
Activity Level
Variable
Embark on a 21-day Oceania cruise from Fiji to Bali aboard MS Paul Gauguin. Hike Koroyanitu National Park, snorkel Espiritu Santo, visit Guadalcanal’s WWII sites, explore Komodo, tour Ubud’s temples, enjoy Polynesian dance, and optional cooking classes and spa indulgence.
Cruise Details
0
Sunset at an ocean resort in Raja Ampat, West Papua, Indonesia
from $11,825
Upgrade
EXPLORE

Solomon Islands Secrets: cruise from Guadalcanal to the Sepik River

Honiara to Sorong - 15 Day Itinerary aboard SH Minerva
  • Explore Rabaul Wartime History
  • Experience Sepik River Culture
  • Discover Lake Sentani Heritage
  • Visit Mansinam Historic Landmarks
Starts / Ends
Brisbane / Sorong
Activities
Festival Visits
Activity Level
Variable
Sail from Brisbane to Sorong on this 15-day expedition aboard SH Minerva. Visit the Solomon Islands, Papua New Guinea, and Papua, exploring historic wartime sites, traditional villages, island communities, and marine environments. Experience local cultures, regional history, and remote destinations across the South Pacific and western Pacific.
Cruise Details
0
37-48 of 51 Results

Plan smarter. Spend better.

Talk with an expert trip planner 800.344.6118

Plan My Trip
Sandra Fernandez employee profile
Sandra F.
Two monkeys admire the statues
Indonesia

Chat Indonesia with a specialist

Our team is waiting and ready to talk with you about your next adventure. So go ahead and book an appointment with one of our specialized trip planners.

Let's Chat
800.344.6118

Where is your next adventure?

Contact Chat Call

Why Travel With Us?

Unbiased Cruise Expertise

We're not tied to any one cruise line, so you receive honest guidance on the best ship and itinerary for you—not a sales pitch.

We Save You Time and Stress

Skip the endless research and information overload—our deep destination expertise helps you design a more seamless trip in a fraction of the time.

More Value, Less Risk

Our extensive travel experience helps you avoid common pitfalls, maximize your time, and get the most out of every part of your trip.

As Featured In

How it Works

Connect

No cost, no commitment. Talk with our experts about your dream trip.

Plan

Share your travel style—we match you with the right itinerary or create one just for you.

Book

Lock in knowing every detail is handled and you’re fully supported.

Travel

Enjoy a seamless journey—and unlock 5% off your next adventure.